G22188


Basic Information

Item Value
gene id G22188
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5657444 ~ 5657651 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26463
CGCTGACTTCCATTGATTGTCTTGTAAACAATTACTATTGtagaaatggaaatgaaatcCAACCTGTGCATTTTGGTGGATCACAAAGGCAAGTAACCCTCCACAAAGATGTCCTGTATCTGAAGGATCAGCTTGCCTTGTCCTTCTGCACAATCTCCCCCAATCCTGCAGCAATTTGGGCACACATAAACCCCGGTTTTCTGACATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26463 True 208 lncRNA 0.44 1 5657444 5657651

Neighbor

gene id symbol gene type direction distance location
osgn1 LOC108272601 coding downstream 6159 5638596 ~ 5651285 (-)
mtss1 mtss1,LOC108273055,LOC108433704,LOC107708130,LOC107685817,LOC107554179 coding downstream 26187 5594109 ~ 5631257 (-)
LOC113532874 cyc1,LOC108433700,LOC108272604,LOC107666085,LOC103023575,LOC107729751,LOC107554183,LOC108414617 coding downstream 137091 5508012 ~ 5520353 (-)
ahcy ahcy,LOC107666127,LOC107596784,LOC107685809,LOC107729767,LOC107554187 coding downstream 194318 5437548 ~ 5463126 (-)
dtd1 dtd1 coding downstream 232324 5422202 ~ 5425120 (-)
pigu pigu,LOC107554168,LOC107596774,LOC107666169,LOC107708084 coding upstream 2152 5659803 ~ 5679959 (-)
chd6 chd6,LOC107666014 coding upstream 104086 5761737 ~ 5863433 (-)
psmf1 psmf1,LOC107580402 coding upstream 324933 5982584 ~ 5989372 (-)
rims4 rims4,LOC107666126,LOC107708122,LOC107696477 coding upstream 398171 6055822 ~ 6118568 (-)
LOC117599288 NA coding upstream 493750 6151401 ~ 6160674 (-)
G22186 NA non-coding downstream 5338 5651875 ~ 5652106 (-)
G22156 NA non-coding downstream 182677 5474557 ~ 5474767 (-)
G21975 NA non-coding downstream 326306 5330826 ~ 5331138 (-)
G21963 NA non-coding downstream 331921 5325159 ~ 5325523 (-)
G21960 NA non-coding downstream 389401 5267485 ~ 5268043 (-)
G22182 NA non-coding upstream 22470 5680121 ~ 5680482 (-)
G22203 LOC108272599,LOC108433672 non-coding upstream 33036 5690687 ~ 5691117 (-)
G22201 NA non-coding upstream 43966 5701617 ~ 5702754 (-)
G22214 NA non-coding upstream 53359 5711010 ~ 5711238 (-)
G22219 NA non-coding upstream 58189 5715840 ~ 5716050 (-)
romo1 romo1,LOC102788570 other downstream 121384 5532037 ~ 5536060 (-)
LOC113533127 NA other downstream 243358 5405967 ~ 5414086 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 456232 5111462 ~ 5201212 (-)
obsl1a obsl1 other downstream 755433 4813275 ~ 4902011 (-)
trnaf-gaa_14 NA other downstream 1325273 4332099 ~ 4332171 (-)
blcap blcap,bc10 other upstream 298988 5956639 ~ 5965183 (-)
LOC117596222 NA other upstream 416384 6074035 ~ 6076877 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other upstream 547633 6205284 ~ 6208666 (-)
G22591 NA other upstream 821751 6479402 ~ 6480011 (-)
mitfa mitf,LOC108424034 other upstream 2602834 8260485 ~ 8265229 (-)

Expression


Co-expression Network