G22199


Basic Information

Item Value
gene id G22199
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5730446 ~ 5735696 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26474
TTActacttcatttattactatattgTCTTTCATTCTTGCATTGCTGTGATATATCCGTTTGAGCAACCTCTggcacaagaatttccctcggGATGAATAAAGTTCTATCTTATCTTATAACTGACAGAGAGAACATtcaaagagagaaggaaggagcaAATTCCCACACTAGGACAAGTGCTAAATCTACTATAGTTAGCCACTGTTACAAAGCTGTTATGAAATGCCACTTACTTGAAGATCTGGAGCAGGGCATCAGTAGGGGCATTGCAGAGGCCGGACACCATGCTCTGCAGGCGACTCACACTTTGAGTAGCTGAAGAGACTGGTGTGATCAGTACCTCCTTCTCCTTCAGGTACCTACGCCCTGTAAGTGGAGTTGAAGGGGCCAGCGAACGCATCTGTGCAGAGGAATAAACATAGCAATCAACATAGCTTGCATACAGTTCAGCTTTTGGCTTGACAATTCCCAAAATCCACATTTTGTAGAAACAATGCAAAAACACTGCACTAGATGTTCATTAATCAACACAATACTATGCATTAAAATTTGAGAAGTTATTAAATTGCTCTGAAAGTAATTCCCATAACAAAAGTATTGGACTGGATTATTGGATACAAAAGAAAGGTTTTCAGtctataacaaaaataaataaaatcaagtcaaaaatgtattgaaaaaagtgatttttgtaGATCTCATTGTAGATCTATTTCTTGTATTTCCACCTCTGATAAACTGAAGAGTTCAGCTGAGTTATGTGACACTAGGCTTGTGCGACAGACtatgtggacattagacaaccaATTTGCGAAAGGATTTtattgaaatgcatttttttttaaaccgtttACTGTGCATTACTTCAGAATCACTTAGTTCACCACCCAGCTGAGTTTTCATGACTGTCACAGTTCCGGACTacacagctgataatattattacatcCTCACCTACTCTCCTTAAAGCTGAAATCATTTTtcctgggttttttttaggCTAGTggttctggatgattaaatcGTTTATCatcttttaaaaacagaaaatcgCAAGCAGGgaaaatcaatatcacacaagcctatgTGACGCATATCTGATTCTTTTCAGTGGGCAAATAGTTTTAGGGTAATGGTTTGATTAGTCAAATCAATAGTGATTTAGGTATGTTTCATACCTTCTCAAAGTGCTGCTGAAGGTTGTTCTCCACCTGCATTCGGGCTGATAACTGACTGGATGGCGGCTTAGGGGTAATTTTGTGTGGTGTGCCAATCTCCTCATTCGCATCAGCACCCAAAAACACTCGCTCATCAAAGTCACCCACCGTCAGGACATATTCTTCATATTCACGATTTATGGCTTTGCTAGACAGTCACACATGAATACATGTTCATCTTATtcattatgtttaaatatataaataaacgtCAGAGATAACCTttacaataacaatatttaataCAGTAATTAGGAAAGATTTAAGCAATTAGTATATTATTAACTAATAATGGTAATGACACTGTAGtaaaattatgtatttttaagcATTACTTAATATGACTTTACAGTTGTGTGAATCCACAAGTATCATCCAAGCGAGACACAGTTAAAGGGTGCTTTATTGGGGAAAGAGAGTACCACATATGTACTACAACATAATTATGTTATACCCTAATATGACACGTGTAAATGGTGAATATGAAGCACAGTAGGATTGGGCCTAACTGAATTACTCCCATGCGACGACagataatgatttataatgatgGTACATACTTATGAGGATAAATTTAGAAACTGGAAGTAGGGTGGGCATTTCTCTATTGTTACCAACTGGATGCAACATGTTTTCAACTATTTTGTAAAGTTCGCAAGGAGAAGTTATAAGAAACttaaacatattagaacaagtgaattaatataaatctgtgattagCTCCCTGTCACAAAGTCagtcacagagagagacattacaCTGAGTAATGTATTACAGTCACAGTGACGTATTACGTGGCATCTTCAAGAAAAAACCACAGCCATATAGCCATCTTTCCCTTCCTACTTCTCTGCTGTGAGTGTCTCTGACTAACATTACACAATGTGGAGCTATCCACTTAGCAGCTTGTGACCAGTGCCAGAGCTACAGCTGACCTGTGCTTTAAAGTAGGACACTCCTCTCATTCTTTTCTACCTAGGAGAGTGTTCCTTCATCTATGTTAAGAGCATCTATGTTTTTCTGGGACTGCTATGGGACCATAGTGTCCGTTAGTCTCGAGTCAGTTTACCCTCCATTTAACTAGTCATTTGCTGCTCTGTTTGCAACATTTATCACTCTGAGTCTTCCCTTTGTGTTGTATAGTTATTCTCACCATTTATTGATTGAAATTTGCACCTCATTTCTTCAGTGCCGAGGTGATCTCTCCCTGTGAATTTCTCTTTTAATATTCCACATTCCCCATCCACTAGCAGGAATTGAATTTGGCAGCCTCAAATACCACCTGCTGCCTTCTTTTATTTCTCCCATTTGagcttgcaaaaaaataaattatattgcaACAGCCTGTAGTACCTActactcaacattttcacactatctaGAATTCACAGTAGCATAGCAACCTGCCACGTTCTGCATGCGCCACTGTACAGCGTGCATGGGCTCACTTCTCTGGTTAAAATAAGcacctgttgtttttttttttggttttttttttttttttttttttcccatcccGATCTAAAAACATTCCAAATCTTGAACTGtatcacaaaaagaaaaatttgtGGAGTGCAAAGACAAGAGTCATGGGAGACTAATGACATGTATGTTCTTAGCAGAGATAAgcctgtagaaaaaaaataaactttttccAAAAGTAGTCTTACATAATGTGCAGCTCACTGTACAGTTGTCTTCATCTAGACTGAACTATTACATTTAAACTGTCGTTTCTTTTTACCAGCTGCCTGCATTTTTTACCGTCTGCCTCACTGTTTTCTCCACTGACCTGATCTCTACAACGACTACGGACTAGCAGTTTATGTAGTAGAATAATCAATTAAGTCTATGTAATccctaatatatattttaaaaaagtacagtaaATGTTATCATGTAATAGAATCTATTTGAATGTTTGCTGTATTAGCCATTCTTTTTTCTAGACATGTCCTATTCTTCTTTCAGGGCCTAGGTTATTGGTGTTAGTCAACAGGATAGGTAATATGTTTATCATTGGTCAGCCGGACCCCACGCACTGCCCAACTCCCAGGATCCTGGGCTTTCTAGAGAAAATACTAAGCAGTGGCAAGTCACCATCTACATTGAAGGGGTACATGGCAGCGATGCTGCAACCACAGCACTGGGGATGGCATCTCAGTAGGATCTCAGGCTTACTACTGCCTTGCTAAAAGCTGCAATTGTTGCCAACATCAATATTCATATTGATAATCCACAAAGCCTTTGAGAATAGTGTTAGTGTCCATCTTAGACTCAGAAGGGGTCATTCAAAATATTATAGGACCCACTCATTTTGGTGAACACATCCTTAATTTAATACCTAGTTCATGTTCCGTTCACACTGTAACGATATGGCTGCACCGGTAGCTCCACTTAAGTCatctatttttgtgttttattgtgcataattttcttatttttgaatTAGTCAGTACAACTTGGGCATTATTCAGTATGACAGTCAAATCCTTCTGGATTTATGTCCATCATTGAACAGGGACTTTAATTCTGTGACAGCTGGTAGCATCAAAGGCTGGGTTATCTACACGTCACTCGTGCTTTGTTTACAAATAAGCCAGAAAAAAGAACCAGGAGAGGGAAGCATGCCGGCATCCTTTGCCAAACTACAAAtttcagctacaatttatttgtatagcccttttaacaatggacattgtcacaaagcagctttacagaaatatattttataattatatgtatttttaatttataaatttatccctactgagcaagccagaggcgacaatggcaaggaaaaactccctgagacgacatgaggaagaaaccttgagaggaaccagactcaaaagggaccccATCCTCATCGGGGTGACACCAGATatgagtgtgattataaattacagtgcaattataaataaatcccttctataactgtgtactatatagtcgaaaagtgcaattgtgtaattGCAAGGtacttatgagcaacttatgaatacAAGCATCAGAGCCACATCATTAAGTGCACAGATGAGATCAGTCCAGAAACTTGTGCATTTCCCAACCAAAAGCCTTGGGTCAATGAGGAGGCTGGAACCAAACTGAGACAATGCGTTGCTACCTACAACTCTGGTTATCCAATGTCCCACAAGAAGTCCAGATATGACCTCCAGAAGGCCATCAGGAATGCCAAGAGGAACTATACAGACAGCGTGGAATCTCACTACCAAAACTTGGTCCTCTGGCGCATGTGGAGTGGCCTGTGTGCCATTAAATATTACAACGGTACCAATAACAGCCACTAAAATTAGACAGAACATTAAGAGTATAAATTTAAACAATCTGATAACGGGAAGATCTCAAGTATTCAGGTGTTTCACATCGCCCCTGGTGGTCATGTGGGTTCCATCGAACCACTTACACATGTAACTAGtcataatgttacattttataaGTTATTTGATAATTAATACATTCACTTAACAAGAacataatgtgtaaataagcaTTACAGAAAAAGTAATTGCTAAGCAAGTCTTAGTGCTCTAATTGTTAATACATACTTAAAAAGTGCTTAATATGAAAATGTTAGTTGTCATTACCATCATTTGTTACTGATTATTGACTAATTTATTGTTTAGTAATGCTTAAATTATGTGTATATGAAGTAATACTTATTAATGCACCcatattgtaaagtgttacttttaataaagggaaaaaaactctTACTTATTGTCTTGGAAGTTTGGAGTGTCCAGCAACTCAGTAAGCGTGTCCTTGTCGCCTTTAAGAATCTTTTTTCTCAAACAGACTTCTGATGTAAGGTTTAAAGTAGTGCTCTTTTATCCCTTTAGCCTCAACAACTAGACCATCGTGCAGTTCGCACAAATGCTCAAGCACGCACTGAGCCTCTTCTGAGCCCCCACAATCTGTTGGCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26474 True 5167 lncRNA 0.38 2 5730446 5735696

Neighbor

gene id symbol gene type direction distance location
pigu pigu,LOC107554168,LOC107596774,LOC107666169,LOC107708084 coding downstream 50487 5659803 ~ 5679959 (-)
osgn1 LOC108272601 coding downstream 79161 5638596 ~ 5651285 (-)
mtss1 mtss1,LOC108273055,LOC108433704,LOC107708130,LOC107685817,LOC107554179 coding downstream 99189 5594109 ~ 5631257 (-)
LOC113532874 cyc1,LOC108433700,LOC108272604,LOC107666085,LOC103023575,LOC107729751,LOC107554183,LOC108414617 coding downstream 210093 5508012 ~ 5520353 (-)
ahcy ahcy,LOC107666127,LOC107596784,LOC107685809,LOC107729767,LOC107554187 coding downstream 267320 5437548 ~ 5463126 (-)
chd6 chd6,LOC107666014 coding upstream 26041 5761737 ~ 5863433 (-)
psmf1 psmf1,LOC107580402 coding upstream 246888 5982584 ~ 5989372 (-)
rims4 rims4,LOC107666126,LOC107708122,LOC107696477 coding upstream 320126 6055822 ~ 6118568 (-)
LOC117599288 NA coding upstream 415705 6151401 ~ 6160674 (-)
tomm34 tomm34,LOC100305086 coding upstream 445332 6181028 ~ 6195188 (-)
G22219 NA non-coding downstream 14396 5715840 ~ 5716050 (-)
G22214 NA non-coding downstream 19208 5711010 ~ 5711238 (-)
G22201 NA non-coding downstream 27692 5701617 ~ 5702754 (-)
G22203 LOC108272599,LOC108433672 non-coding downstream 39329 5690687 ~ 5691117 (-)
G22182 NA non-coding downstream 49964 5680121 ~ 5680482 (-)
G22229 NA non-coding upstream 59246 5794942 ~ 5795147 (-)
G22231 NA non-coding upstream 128169 5863865 ~ 5864101 (-)
G22237 NA non-coding upstream 134804 5870500 ~ 5870701 (-)
LOC117595835 NA non-coding upstream 153586 5889282 ~ 5890832 (-)
G22345 NA non-coding upstream 254274 5989970 ~ 5990195 (-)
romo1 romo1,LOC102788570 other downstream 194386 5532037 ~ 5536060 (-)
LOC113533127 NA other downstream 316360 5405967 ~ 5414086 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 529234 5111462 ~ 5201212 (-)
obsl1a obsl1 other downstream 828435 4813275 ~ 4902011 (-)
trnaf-gaa_14 NA other downstream 1398275 4332099 ~ 4332171 (-)
blcap blcap,bc10 other upstream 220943 5956639 ~ 5965183 (-)
LOC117596222 NA other upstream 338339 6074035 ~ 6076877 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other upstream 469588 6205284 ~ 6208666 (-)
G22591 NA other upstream 743706 6479402 ~ 6480011 (-)
mitfa mitf,LOC108424034 other upstream 2524789 8260485 ~ 8265229 (-)

Expression


Co-expression Network