G22231


Basic Information

Item Value
gene id G22231
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5863865 ~ 5864101 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26509
CAAAACTTGAAAGGCACCTTCAAGTCCCCGTAATGAGGAGATATTTGTAAGTTTGGGGTATCAATGTCAACAGAGGGCGGAGTTAAattcaaatagctgtttctcaggaacctaGTCTGATTGATCTGAAATTTGATATGCAGCATTTTAtctgctaatctgtaactggattttaatttctattgGATTACTTCAAAAATATGGCTGCCTTTagcaaaacatttcaaacaatTTCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26509 True 237 lncRNA 0.36 1 5863865 5864101

Neighbor

gene id symbol gene type direction distance location
chd6 chd6,LOC107666014 coding downstream 432 5761737 ~ 5863433 (-)
pigu pigu,LOC107554168,LOC107596774,LOC107666169,LOC107708084 coding downstream 183906 5659803 ~ 5679959 (-)
osgn1 LOC108272601 coding downstream 212580 5638596 ~ 5651285 (-)
mtss1 mtss1,LOC108273055,LOC108433704,LOC107708130,LOC107685817,LOC107554179 coding downstream 232608 5594109 ~ 5631257 (-)
LOC113532874 cyc1,LOC108433700,LOC108272604,LOC107666085,LOC103023575,LOC107729751,LOC107554183,LOC108414617 coding downstream 343512 5508012 ~ 5520353 (-)
psmf1 psmf1,LOC107580402 coding upstream 118483 5982584 ~ 5989372 (-)
rims4 rims4,LOC107666126,LOC107708122,LOC107696477 coding upstream 191721 6055822 ~ 6118568 (-)
LOC117599288 NA coding upstream 287300 6151401 ~ 6160674 (-)
tomm34 tomm34,LOC100305086 coding upstream 316927 6181028 ~ 6195188 (-)
eif6 eif6,LOC107723919 coding upstream 441071 6305172 ~ 6313411 (-)
G22229 NA non-coding downstream 68718 5794942 ~ 5795147 (-)
G22199 NA non-coding downstream 128169 5730446 ~ 5735696 (-)
G22219 NA non-coding downstream 147815 5715840 ~ 5716050 (-)
G22214 NA non-coding downstream 152627 5711010 ~ 5711238 (-)
G22201 NA non-coding downstream 161111 5701617 ~ 5702754 (-)
G22237 NA non-coding upstream 6399 5870500 ~ 5870701 (-)
LOC117595835 NA non-coding upstream 25181 5889282 ~ 5890832 (-)
G22345 NA non-coding upstream 125869 5989970 ~ 5990195 (-)
G22367 NA non-coding upstream 179015 6043116 ~ 6043752 (-)
G22470 NA non-coding upstream 284845 6148946 ~ 6149167 (-)
romo1 romo1,LOC102788570 other downstream 327805 5532037 ~ 5536060 (-)
LOC113533127 NA other downstream 449779 5405967 ~ 5414086 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 662653 5111462 ~ 5201212 (-)
obsl1a obsl1 other downstream 961854 4813275 ~ 4902011 (-)
trnaf-gaa_14 NA other downstream 1531694 4332099 ~ 4332171 (-)
blcap blcap,bc10 other upstream 92538 5956639 ~ 5965183 (-)
LOC117596222 NA other upstream 209934 6074035 ~ 6076877 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other upstream 341183 6205284 ~ 6208666 (-)
G22591 NA other upstream 615301 6479402 ~ 6480011 (-)
mitfa mitf,LOC108424034 other upstream 2396384 8260485 ~ 8265229 (-)

Expression


Co-expression Network