G22367


Basic Information

Item Value
gene id G22367
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6043116 ~ 6043752 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26653
TAATAGGTTTGATCTTTTCGACTTCAGTTTGATCGCTGTTGTCTGCATCTTCACCCAGTCCACTATCCTCTGTATCTAAGCTACTGCTACATAACCccattttttgttcttctttctgtcCAAGTGTCTTCTCACCATGGTGGTGTTTCCTGTTGAGAGAATCATTGCCCATGAAGTTTCTTGGCTCCCCTGGGGCAGTCTGATGGGCATGGATTTTTTCCTTGATGGAGCTCGCCAGATCATGGTTTCCCTCACTGTGTTttggtgttatgttttttttcagaatgcCCGTCTTATTGACTGTGAAAACATCCGGCGTGACCAGTAGCTTGCTCCTCTctgtttccttctctttctcttcttcaatAATAGAGTCAGGCAGCCAGCCTGAAGGGATGGTGTCTTGTTTTCCTATGTACTCTTTGGAAACTTTGCAGCTTTGCAAACTCTTTGCCAGGTTGGTCATTGTGCTGGCTACCTTGATCTTTCTTCCAGTCCTGCTAAAAGATTGACACTCCTGAGTGGTCATGGAACTCATGATTAGTCCACTTCTGCGGTTGGTGTTCAGTACAGAAAGGAACTATAAGCCTCTGTGGTAAGGGATGTGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26653 True 610 lncRNA 0.45 2 6043116 6043752

Neighbor

gene id symbol gene type direction distance location
psmf1 psmf1,LOC107580402 coding downstream 53744 5982584 ~ 5989372 (-)
chd6 chd6,LOC107666014 coding downstream 179683 5761737 ~ 5863433 (-)
pigu pigu,LOC107554168,LOC107596774,LOC107666169,LOC107708084 coding downstream 363157 5659803 ~ 5679959 (-)
osgn1 LOC108272601 coding downstream 391831 5638596 ~ 5651285 (-)
mtss1 mtss1,LOC108273055,LOC108433704,LOC107708130,LOC107685817,LOC107554179 coding downstream 411859 5594109 ~ 5631257 (-)
rims4 rims4,LOC107666126,LOC107708122,LOC107696477 coding upstream 12070 6055822 ~ 6118568 (-)
LOC117599288 NA coding upstream 107649 6151401 ~ 6160674 (-)
tomm34 tomm34,LOC100305086 coding upstream 137276 6181028 ~ 6195188 (-)
eif6 eif6,LOC107723919 coding upstream 261420 6305172 ~ 6313411 (-)
mmp24 mmp24,LOC107723920,LOC107587563,LOC107696473,LOC107666082 coding upstream 280362 6324114 ~ 6362835 (-)
G22345 NA non-coding downstream 52921 5989970 ~ 5990195 (-)
LOC117595835 NA non-coding downstream 152284 5889282 ~ 5890832 (-)
G22237 NA non-coding downstream 172415 5870500 ~ 5870701 (-)
G22231 NA non-coding downstream 179015 5863865 ~ 5864101 (-)
G22229 NA non-coding downstream 247969 5794942 ~ 5795147 (-)
G22470 NA non-coding upstream 105194 6148946 ~ 6149167 (-)
G22478 NA non-coding upstream 186008 6229760 ~ 6229969 (-)
G22539 NA non-coding upstream 239363 6283115 ~ 6283948 (-)
G22538 NA non-coding upstream 254370 6298122 ~ 6301047 (-)
G22650 NA non-coding upstream 578183 6621935 ~ 6622442 (-)
blcap blcap,bc10 other downstream 77933 5956639 ~ 5965183 (-)
romo1 romo1,LOC102788570 other downstream 507056 5532037 ~ 5536060 (-)
LOC113533127 NA other downstream 629030 5405967 ~ 5414086 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 841904 5111462 ~ 5201212 (-)
obsl1a obsl1 other downstream 1141105 4813275 ~ 4902011 (-)
LOC117596222 NA other upstream 30283 6074035 ~ 6076877 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other upstream 161532 6205284 ~ 6208666 (-)
G22591 NA other upstream 435650 6479402 ~ 6480011 (-)
mitfa mitf,LOC108424034 other upstream 2216733 8260485 ~ 8265229 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other upstream 2299872 8343624 ~ 8351694 (-)

Expression


Co-expression Network