LOC113546630 (cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035)


Basic Information

Item Value
gene id LOC113546630
gene name cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6205284 ~ 6208666 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26749
AAAAACCGGTCATCCGTCACTTCCCGTGATGCTTTGCGGGCAGTTTGGCCCTTGCGAGGTTCCGTAGTACTTCAACGCGTTGGCTTCGATTGCGGACGTTTTCTGTGAAGGTCGTGCATCGAAAGATCTTTCAGCATGTCTCTGCCAAAGCCTCAGATGAGAGGTCTCCTCGCAAAGCGGTTGAGGTTCCATCTGCCCCTCGCTTTTGCCCTGGCTCTGTCCGCAGCAGCTACATTCAAGttcacAGTAACAGAACCCCGGAAAAAGGCTTATGCTGACTTTTACAAGCAGTATGATGCCATGAAGGAGTTTAACAGTATGAAGGAGGCTGGGGTTTTTGAGAGTGCGAGGCCTTCTGGTGAATAAATTGATGTGGTTCTGTCTCTGCATTTTTATTCTGTGCTGCACCTTCACTACtggatgttaaatatataataaacatacaaataaatcatTGTCAATTCCTGTACAAGTGCAGTAATTTCTTGAGCCATtgagaaataaaatgtcttttgactCTGTTTCTTTAATGTACTTTATC
>XM_026946617.2
CTAAGGTCGCTGAAAAACCGGTCATCCGTCACTTCCCGTGATGCTTTGCGGGCAGTTTGGCCCTTGCGAGGTTCCGTAGTACTTCAACGCGTTGGCTTCGATTGCGGACGTTTTCTGTGAAGGTCGTGCATCGAAAGATCTTTCAGCATGTCTCTGCCAAAGCCTCAGATGAGAGGTCTCCTCGCAAAGCGGTTGAGGTTCCATCTGCCCCTCGCTTTTGCCCTGGCTCTGTCCGCAGCAGCTACATTCAAGttcacAGTAACAGAACCCCGGAAAAAGGCTTATGCTGACTTTTACAAGCAGTATGATGCCATGAAGGAGTTTAACAGTATGAAGGAGGCTGGGGTTTTTGAGAGTGCGAGGCCTTCTGGTGAATAAATTGATGTGGTTCTGTCTCTGCATTTTTATTCTGTGCTGCACCTTCACTACtggatgttaaatatataataaacatacaaataaatcatTGTCAATTCCTGTACAAGTGCAGTAATTTCTTGAGCCATtgagaaataaaatgtcttttgactCTG

Function

symbol description
cox6c Predicted to enable cytochrome-c oxidase activity. Predicted to be involved in oxidative phosphorylation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Orthologous to human COX6C (cytochrome c oxidase subunit 6C).

NR:

description
PREDICTED: cytochrome c oxidase subunit 6C-1

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26749 True 541 lncRNA 0.44 4 6205284 6208654
XM_026946617.2 False 533 mRNA 0.46 4 6205304 6208666

Neighbor

gene id symbol gene type direction distance location
tomm34 tomm34,LOC100305086 coding downstream 10096 6181028 ~ 6195188 (-)
LOC117599288 NA coding downstream 44610 6151401 ~ 6160674 (-)
rims4 rims4,LOC107666126,LOC107708122,LOC107696477 coding downstream 86716 6055822 ~ 6118568 (-)
psmf1 psmf1,LOC107580402 coding downstream 215912 5982584 ~ 5989372 (-)
chd6 chd6,LOC107666014 coding downstream 341851 5761737 ~ 5863433 (-)
eif6 eif6,LOC107723919 coding upstream 96506 6305172 ~ 6313411 (-)
mmp24 mmp24,LOC107723920,LOC107587563,LOC107696473,LOC107666082 coding upstream 115448 6324114 ~ 6362835 (-)
fam83c fam83c coding upstream 191750 6400416 ~ 6413610 (-)
LOC113532448 LOC108272058,LOC108411580,LOC107696472,LOC107723922,LOC107708114,LOC106582647,LOC107587565,LOC107666149,LOC107595422 coding upstream 225253 6433919 ~ 6462290 (-)
gdf5 gdf5 coding upstream 294855 6503521 ~ 6516423 (-)
G22470 NA non-coding downstream 56117 6148946 ~ 6149167 (-)
G22367 NA non-coding downstream 161532 6043116 ~ 6043752 (-)
G22345 NA non-coding downstream 215089 5989970 ~ 5990195 (-)
LOC117595835 NA non-coding downstream 314452 5889282 ~ 5890832 (-)
G22237 NA non-coding downstream 334583 5870500 ~ 5870701 (-)
G22478 NA non-coding upstream 21094 6229760 ~ 6229969 (-)
G22539 NA non-coding upstream 74449 6283115 ~ 6283948 (-)
G22538 NA non-coding upstream 89456 6298122 ~ 6301047 (-)
G22650 NA non-coding upstream 413269 6621935 ~ 6622442 (-)
G22695 NA non-coding upstream 466814 6675480 ~ 6675687 (-)
LOC117596222 NA other downstream 128407 6074035 ~ 6076877 (-)
blcap blcap,bc10 other downstream 240101 5956639 ~ 5965183 (-)
romo1 romo1,LOC102788570 other downstream 669224 5532037 ~ 5536060 (-)
LOC113533127 NA other downstream 791198 5405967 ~ 5414086 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 1004072 5111462 ~ 5201212 (-)
G22591 NA other upstream 270736 6479402 ~ 6480011 (-)
mitfa mitf,LOC108424034 other upstream 2051819 8260485 ~ 8265229 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other upstream 2134958 8343624 ~ 8351694 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other upstream 2270708 8479374 ~ 8484181 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 3226840 9435506 ~ 9441845 (-)

Expression


Co-expression Network