G22650


Basic Information

Item Value
gene id G22650
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6621935 ~ 6622442 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26972
TTTAATGTCAGATAGAGGTCACATTGACAACATAGTGTGAACagcctaacaaaaaaaatcggATTTGGTCAGTAAATCAGGTTTGGGCAACTTTTGCCTGCTtgtaaaaatatccttattGAGGTCAGGCACTTATGTCAGACAAGAAGAGCTGGAGTGCAGTCTGCGTTCCAtttaatcccaaaggtgttcagtggggttgagatcagggctctgtgcaggccactcatgtttttccactccaaccttgccACACCATGTccttatggacctcgctttgtgcacaggggcattgtcatgctggaacatgtttgggccccttagttccagtgaatagaaactgtaatgctacagcatacaaagacatcctatacaattgtgtgattcTCAATTTGTGTCAATaatttggggaaggcccacaaacttttggccatataatataaatgagaTGAAATCAGATTGAGGATACCATGATAAATGTTACAACTGTGTCACTATAAATTCAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26972 True 508 lncRNA 0.41 1 6621935 6622442

Neighbor

gene id symbol gene type direction distance location
rbpjl rbpjl,LOC108271532 coding downstream 19826 6578612 ~ 6602109 (-)
oser1 oser1 coding downstream 66751 6549355 ~ 6555184 (-)
sdc4 NA coding downstream 84562 6527609 ~ 6537373 (-)
gdf5 gdf5 coding downstream 105512 6503521 ~ 6516423 (-)
LOC113532448 LOC108272058,LOC108411580,LOC107696472,LOC107723922,LOC107708114,LOC106582647,LOC107587565,LOC107666149,LOC107595422 coding downstream 159645 6433919 ~ 6462290 (-)
LOC113531909 stk4,LOC108435692,LOC105901859,LOC103371188 coding upstream 121941 6744383 ~ 6770848 (-)
rhebl1 rhebl1,rheb,LOC103035598,LOC108435697,LOC105901881,LOC107710165 coding upstream 159831 6782273 ~ 6787592 (-)
cntn4 cntn4,LOC108272185,LOC108435696,LOC107713523,LOC107667016,LOC106582845 coding upstream 178483 6800925 ~ 6959160 (-)
LOC113529215 LOC108271629,LOC108435695 coding upstream 443876 7066318 ~ 7193141 (-)
chl1b chl1,LOC100380675 coding upstream 659565 7282007 ~ 7370519 (-)
G22538 NA non-coding downstream 320888 6298122 ~ 6301047 (-)
G22539 NA non-coding downstream 337987 6283115 ~ 6283948 (-)
G22478 NA non-coding downstream 391966 6229760 ~ 6229969 (-)
G22470 NA non-coding downstream 472768 6148946 ~ 6149167 (-)
G22367 NA non-coding downstream 578183 6043116 ~ 6043752 (-)
G22695 NA non-coding upstream 53038 6675480 ~ 6675687 (-)
G22699 NA non-coding upstream 61012 6683454 ~ 6683730 (-)
G22743 NA non-coding upstream 95833 6718275 ~ 6765692 (-)
G22896 NA non-coding upstream 177076 6799518 ~ 6800819 (-)
G23337 NA non-coding upstream 1050258 7672700 ~ 7675334 (-)
G22591 NA other downstream 141924 6479402 ~ 6480011 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 413269 6205284 ~ 6208666 (-)
LOC117596222 NA other downstream 545058 6074035 ~ 6076877 (-)
blcap blcap,bc10 other downstream 656752 5956639 ~ 5965183 (-)
romo1 romo1,LOC102788570 other downstream 1085875 5532037 ~ 5536060 (-)
mitfa mitf,LOC108424034 other upstream 1638043 8260485 ~ 8265229 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other upstream 1721182 8343624 ~ 8351694 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other upstream 1856932 8479374 ~ 8484181 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 2813064 9435506 ~ 9441845 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 3093074 9715516 ~ 9726051 (-)

Expression


Co-expression Network