G22743


Basic Information

Item Value
gene id G22743
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6718275 ~ 6765692 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU27070
TTGACTTGCAAAGATTCCAGAGAGGAAGTGAGCCGATATTTGATTGACATTGCACAGTACATGACTTTGAAATAGGCTATGAATTTTCACATTTGCAACTCAATAGTAGTCACTATAACATTCACATAACTGTATCTCTGAAATAGtgtgttaaaaatgtgtatgtagCATTTGTCTGATAGTGTGTAACTGACTTGCCATGCCTCACATGATTAGTTTGAAAACCTTGGGAAATTTGACTGGCTTTTGACAGGGTTAGAACCGTGCCACTgtgttgccaattaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27070 True 298 lncRNA 0.37 2 6718275 6765692

Neighbor

gene id symbol gene type direction distance location
rbpjl rbpjl,LOC108271532 coding downstream 116166 6578612 ~ 6602109 (-)
oser1 oser1 coding downstream 163091 6549355 ~ 6555184 (-)
sdc4 NA coding downstream 180902 6527609 ~ 6537373 (-)
gdf5 gdf5 coding downstream 201852 6503521 ~ 6516423 (-)
LOC113532448 LOC108272058,LOC108411580,LOC107696472,LOC107723922,LOC107708114,LOC106582647,LOC107587565,LOC107666149,LOC107595422 coding downstream 255985 6433919 ~ 6462290 (-)
rhebl1 rhebl1,rheb,LOC103035598,LOC108435697,LOC105901881,LOC107710165 coding upstream 16581 6782273 ~ 6787592 (-)
cntn4 cntn4,LOC108272185,LOC108435696,LOC107713523,LOC107667016,LOC106582845 coding upstream 35233 6800925 ~ 6959160 (-)
LOC113529215 LOC108271629,LOC108435695 coding upstream 300626 7066318 ~ 7193141 (-)
chl1b chl1,LOC100380675 coding upstream 516315 7282007 ~ 7370519 (-)
ppp4r2b ppp4r2,LOC102785172,LOC107667031 coding upstream 1012498 7778190 ~ 7786449 (-)
G22699 NA non-coding downstream 34545 6683454 ~ 6683730 (-)
G22695 NA non-coding downstream 42588 6675480 ~ 6675687 (-)
G22650 NA non-coding downstream 95833 6621935 ~ 6622442 (-)
G22538 NA non-coding downstream 417228 6298122 ~ 6301047 (-)
G22539 NA non-coding downstream 434327 6283115 ~ 6283948 (-)
G22896 NA non-coding upstream 33826 6799518 ~ 6800819 (-)
G23337 NA non-coding upstream 907008 7672700 ~ 7675334 (-)
G23330 NA non-coding upstream 939435 7705127 ~ 7710210 (-)
G23417 NA non-coding upstream 1117836 7883528 ~ 7883813 (-)
G23426 NA non-coding upstream 1140633 7906325 ~ 7907008 (-)
G22591 NA other downstream 238264 6479402 ~ 6480011 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 509609 6205284 ~ 6208666 (-)
LOC117596222 NA other downstream 641398 6074035 ~ 6076877 (-)
blcap blcap,bc10 other downstream 753092 5956639 ~ 5965183 (-)
romo1 romo1,LOC102788570 other downstream 1182215 5532037 ~ 5536060 (-)
mitfa mitf,LOC108424034 other upstream 1494793 8260485 ~ 8265229 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other upstream 1577932 8343624 ~ 8351694 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other upstream 1713682 8479374 ~ 8484181 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 2669814 9435506 ~ 9441845 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 2949824 9715516 ~ 9726051 (-)

Expression


Co-expression Network