G23330


Basic Information

Item Value
gene id G23330
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 7705127 ~ 7710210 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU27688
GTAAAAAGTCCAGGGAGTCAAATGACAGTGAGTTTGGGTTTATACACTGTGCAGTCACAGATTATATGGTTCACCGCTGACAAACCATAAACAAATAATGCTTAGCTTTCAACCCACTAACCTAAATGTGGCCAGTGAGTTCACTGTTTAAATGTAACAGAAGGGCAGAGAAAGGGGGCTTTAAGGAGGAGAGACATGGGAAAAGAAGcactaaagataaaaaaaaaaaaataaatcacttgcGTCTACTAAGCAGAACGGAAACACTTGGCGTCTGCTGCACTCAACATATGAGCAGCAATCTGAATGGAATTAAaactctttctctgtgtgtgtgtgtgtgtgtttgcttgtgcACTTTCATGAGCCGGTTGCTCAACACCCGGCCACCCAGTTTACATAAACACTCTGCCCTTCCAGCAGTACAACAACCACTCGGCTTTGTCTCGAGCTCTGAATTCTGAGTATGCGAGTGTGTTTATACGTTCTGTGGTCACCATTTTAAACACACCTACCTTCTAGCTACAAAGATCGACCATTTCGTCAGGTAAAACTACCATATAGGTGCACGTTATCCCTACTGTAGGTATCTCCATCTGTGGCTATGTACGATTTGTCTTACCCAATCCATCAGTAGAAAGGGAGCACTGCTGACCTGATGTTTGGCTGGTGGATCTCAGCACAGTAGTGACACTGATACTGGgctaatggagtgtgtgtgtgtgtgtgtttgggggtatGGGGGTGTGTTTTGCTGACATTATGACACCTGAATTTCACTTCTGGGTTGAGAAATAGTTGACGaaccaaaaatatccagccaacAGTGGTGCTGTTGTCAGAAATGTACACTGATGATGAGGCTATACAACGATAAGCAAATTGTGCAggggagcaaaaaaaaaaaaaaaagaaagaaagtgaaacacttttaacacacactttttaatacacactctgtatatatatatacatatacatgggtacagggtgtcccaaagaTCTCCATATATGGGGGAAAATTAGCACTTTTCGGCCAAAAAAGTCaattccaaaatttttcatacattgtttatattgcatattttttcagatttcagaacatactgaaatcattctcatggttGGATCagctgttgcaaggttgcgatggacctcaacaggaaacatggcaagcacatcacacactcacactgttgccaaacttgttaacaaattcaaaaagactggaagtgttgtgggCCAACTGAGAAgcggacgtccacgaacatccgcTGACGAAGGCACAGCTGACGTGGTGCTGACATGCATAGtccatatgtatgtatatgtatgtataagtgTTAGTATAAAAACAGAACATGTATCTGCTAGTTCACTTAcaaccttaattttttttcccttaaaaacTGTATGTATTAGCTTCTGCCTGAAAAGGGTGACAGTGagcttttttatatatatatatatatatatatatatatattgaatctACTTGTCCACTGGGCTACGAATAAAAACCtaatagcccagacatgaaATATGCCTGGCCCGGGCACCTGGGCTTGCCGTATGTCCATGCCAGAGGACATAACCATGGACAAGCACTCATGCTGTATGTCATACACTCATGCCAGTGGCACATAAAAACTATCATGTTAGTGTCACTGCTATACTGCAAATGATGATCCAGATCATAGCTGGTCAGTGTTGTTCTTTGAACAGGGTAGACCAGGGCATATAGCATTTACACTGTAGGTGTACCAACCAAAGTGACGactgagtgtgtctgtgtgcctgcACACACTCAACAAAGCACAGTCAGCTTAGTTGGCATGTGGCACCAGAAGATTGTCCAGGCCTTTGCTAGCTGTTGTTGAGGTTTCATAATGTTTGTCGCAGCACTGCTGGcacaatggtgtgtgtgtggcatgtggCTAAGCTCATGCTGGGATTCGCTCGTGGCTGCAGCAGACAGAGGCTGGTGACCCAAAGTAAACAAGCTTCTTATCCACTTGCACAAAGGGGCCTTCTGCCACAAATGACAGCCTCTAAGAAACCTTCCACCCCCAAAgccctgtgtgcatgtttgtgtaaatgtgtgtgtgtgtgtgttggcaatGGAGGTCTCTTGATTTGGCTTTTCCAAACCCATCTTTTACGAACGTGCATTCCGAACCACAAGTTCGGGCAAAAATTGTCTTCAGATGCTACACGTTTGGATTAAGCCCAGCTAAATGACGCCAGCATACGATAGAGTAATGTTTGCTAATGTACTGCTGTTTCCTTTAGTTAGACCAACTCTTTGAGTTCTCATACATTGTCAGTTACATCATGCTCCTTCCAGACAGTTTAATGTGCTCTGAAACCAGTATACTCTGGCAAAATCTCTAGAGCACATACCTTACTTCCAAAATCAATGTCATTTAAGACACTGTGTCTGATGCAGTCTACGATTCAACTTGGCTTTGGACTTGAGGTTATTATTTAACACCATATAACAGTCCTCTGCAGCAGCGAAGCCTCTGATGTTAACCATTTCACACAGTCGTGGCAGTTAATGATACACGACACTTGTGAAACAGGCCGCAGGTTAAAATGGCATGCTTCTCACTCAACTTCCACATCCTTAAAAGCAACCACTCTAGCAGCAGAATGAAAGGTTACTACTATAATTGACAGTTTTCTATAAGAAAATGCTCGAGGGAAAAAAGTAATCTATAATCACCAGTAGACAATTGACAGTGAACATGCCTACACTACTGTTCTCTGTGTAAAGATTTACTTTGGGTAAACATAGGCTTGAAAATGTGTAAGCAAACATTACAGGAAAAGGGGCAAACATACTTGTATATATGTACTTGCCATTGAGTTCATTCATTTAAGAATCCATCAAATGTAAAAGTCCACAGACTAATGTTAGTCAAGGACCCAAGAGAGCTTGTCAGTGCTGGTCAGGGGTCAGTGGCTAGAATGCAAAGAGCGAAGAGATGAAGCAAAATGGCTCAAATGGTCATGGCTTAAAGGAACATTTCCCCCAAATGTGCCAAACTGATTAAAGGCTAATGAGATTAGTTACACTAGCTGTTTAGAAAAAAAGGCACCTGTTGTTTTACTCGTTATTAGCAATGTGAGAATTTCATTTAGACCCAAGTTAAGGTCCGTGTTTATAACATCATTATGTTCACAGTTTGAACTTTTCTTTGGAGTGAAAAAGGGCTGAGGCCATACATGTTCTATGAActatacactaaacacactaaagtGGAAAGATGCAAGATTTTTTGCTCTCTCTGGTAGTAACACCCTACTGGTTTTTATCTGCTGTTACTGTTGTCTGGTCAAGTCTGCAAAAGCATTAGCCACTCGCCAACAAACGTTAGCATGATAGCTAAAACAAagatcagttaaaaaaaaaaaaataaataaataaataattaatgcatACCACTTTACCAAAAAGAAATACACCAAAAAATGTCAGCCATTAGATGGCCTATATTATTACGCTAGCTAAAACAGttcaggaaaaacacacacagatctgtcAAAATTACAAACACCAAGAGCGAACAGAAATATCGACTGACTAGTTGCTCTTGCCCAATTTGTTTGCAAAGCaaaaatacacataacacaTCAAGCGTGCCCGCTAGCCCCAGCCAGCTAGTTAAAACAACTGGCTAATGGCATAAATGTCCCCAAAAGGAGAATAAATCAGCTGATGGTCATTCATCAACTTCCAACCAAATTACAGAGCAAATAAATGCCTTAATGGCTTGAATCCAATCTACACTTATAACATCAGACTtctgtttggtttattttcactCTCAAATGTGCCCTCTTTTGTCTGACTGCCTGCAGCTCCTGTGTTTTTTCCTTACTTTTGTGGAGGTTGCCCATAATACCGCAGTTAACTGTACCTATTAACGCATCATAATTCCACTAAACCTGACTACAccccctctgtctgtctgcacctaattaacaaattaacagaTCAGGTTTACTCCTGGACTGCAGCCTCCCTCAACTCCAGGCTGGAGAGGCTCAGTTGAACGTGAGGTGCACTGGTACAGATTAACGCTAATCTCTTGGCTAATGAAAACAGGGGTGTGTGCAATGGAGCCTGTAGGGCCTTTGAAGACGGCTCAGCTGGGTGGAATAAAAAGAAATCCCCCAGAGCACCAGGTCCCCAGGGGCAGAGCTACAGCCTGAGTATCAGAGGTCAAGTCGGGCTTTAGCAGGTCCTTACGCCTaattctgctgtctctctcactcttgaAATTGAATAAAAGTCGTAGTTGTCTCCTGGCATAGTTACAGCAACTGGGGTCCAGTGAGGTAGGTCTTCTTTACCTAATGGAAGCCTCTTGGGCAAGATCCAGCTCATTTCacagagaatgtgtgtttattaagggcaaaaaaaagagagagagataaagacactGAATGAAAGACAGTATGTCAGCGGAGTAGCTTGTATATATACATGACCACAGGCAGCCGGGAGACGGAGGCTCTACTTCTCAGACTTGGCACAGGCTAAAGGTCGTAACATCAAAGAAGCAGCGAAAGCCTCAGAGGCTCATTGAGTCCACTTCAACAAAGCAGCCCGAGTCCATAACCAGAGCCCACTTGATTAGAAATGTAAATGCAGTACTGCCCAGCCAAGCTAAATGGCCTCAAGCACCCTACCAGGGCTGCTGAACTGAAGAGACTCATAGTGTGCTCAGCAATTTCAGCTCTCTGCTGCTTGTCTTGGCAACCGTGAGGAAAGACTCTGACCAATTCGTCCAACACTGAGCTAACAACAGGCCATTGAGTATGCTGCTGACATGGCCTGTCTTTTTTAAGGCTACACTTCAGCCTCCAAAACCAAGCTGTCTCTCTGGTTTTTGGACATCGATACTCCTAATGCATGttaggtttattattatttgaaagAACAAATTCAAGGCAAAAATCACCACCACTGTGGTAAATTTAACCCATTTTCTTCTACACCAAATCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27688 True 5019 lncRNA 0.42 2 7705127 7710210

Neighbor

gene id symbol gene type direction distance location
chl1b chl1,LOC100380675 coding downstream 334608 7282007 ~ 7370519 (-)
LOC113529215 LOC108271629,LOC108435695 coding downstream 511986 7066318 ~ 7193141 (-)
cntn4 cntn4,LOC108272185,LOC108435696,LOC107713523,LOC107667016,LOC106582845 coding downstream 745967 6800925 ~ 6959160 (-)
rhebl1 rhebl1,rheb,LOC103035598,LOC108435697,LOC105901881,LOC107710165 coding downstream 917535 6782273 ~ 6787592 (-)
LOC113531909 stk4,LOC108435692,LOC105901859,LOC103371188 coding downstream 934279 6744383 ~ 6770848 (-)
ppp4r2b ppp4r2,LOC102785172,LOC107667031 coding upstream 67980 7778190 ~ 7786449 (-)
gxylt2 gxylt2,LOC107666964,LOC106565732 coding upstream 78353 7788563 ~ 7822058 (-)
gpr27 gpr27 coding upstream 281004 7991214 ~ 7993623 (-)
gnat1 LOC108271583,LOC108424115,LOC102793896,LOC108231337 coding upstream 859137 8569347 ~ 8574762 (-)
inka1b LOC108271512,LOC108415076,LOC107723929,LOC107587643,LOC107708110,LOC107595459,LOC107666006 coding upstream 1139772 8849982 ~ 8853110 (-)
G23337 NA non-coding downstream 29793 7672700 ~ 7675334 (-)
G22896 NA non-coding downstream 904308 6799518 ~ 6800819 (-)
G22743 NA non-coding downstream 939435 6718275 ~ 6765692 (-)
G22699 NA non-coding downstream 1021397 6683454 ~ 6683730 (-)
G22695 NA non-coding downstream 1029440 6675480 ~ 6675687 (-)
G23417 NA non-coding upstream 173318 7883528 ~ 7883813 (-)
G23426 NA non-coding upstream 196115 7906325 ~ 7907008 (-)
G23427 NA non-coding upstream 203486 7913696 ~ 7914794 (-)
G23428 NA non-coding upstream 205399 7915609 ~ 7916592 (-)
G23424 NA non-coding upstream 214955 7925165 ~ 7925431 (-)
G22591 NA other downstream 1225116 6479402 ~ 6480011 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 1496461 6205284 ~ 6208666 (-)
LOC117596222 NA other downstream 1628250 6074035 ~ 6076877 (-)
blcap blcap,bc10 other downstream 1739944 5956639 ~ 5965183 (-)
romo1 romo1,LOC102788570 other downstream 2169067 5532037 ~ 5536060 (-)
mitfa mitf,LOC108424034 other upstream 550275 8260485 ~ 8265229 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other upstream 633414 8343624 ~ 8351694 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other upstream 769164 8479374 ~ 8484181 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 1725296 9435506 ~ 9441845 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 2005306 9715516 ~ 9726051 (-)

Expression


Co-expression Network