G23428


Basic Information

Item Value
gene id G23428
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 7915609 ~ 7916592 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU27788
TTGCAGAAAGGAAggtgggactttttttttattattatttttttttcatcttgccgcaaaaaaaaagtgactacTTCTAAGCTGTGATTGGTGGATCACCATGTCAGTCAGCCGTGGAGATTCAAGTGTCATGCTCTCCTCTGATTCCCATGGCAATAGAAAGCTCAGCAAGAAAACTGTGCCACCCAGTTAATATCAGACCTGAAGCGGACGTCAGTGTGCCAGTGTTCTGGCGATTTATCCTACCTTGTCGAAATGTCCTACCGTAGCGTACATTTGTAGGTCTTATCTAACAAAGAACCCAGTAAGGATAGGTATGAACATTGCTAGATAACTAAGTATAAATGCATAATTATAGAGGTTAAACTTAGCTAACTTTATCTGACGCTCATCACATTTAACCATTTTTGGCCATTATGTTACGTGTTAACTTAGCTGGCGATGGAGAGTGCTCTTTCAGCTCTTCCGTGAGTAGGCTAGTAATGCTTATTCAAATCACTGGTTGCACATTAACCTGCATGCCAGGCATTAATGCCATAATGAATTGGTACTGAGTATTCCCTGATCAAATTCCGATGTGGTTAAGCTAGGTTAGACTAGCTCAGTGTAAAATAGGACAGTGTTTTCAAacctgacagaaaggctatatCGTACATTTAGAgcaacatgaaacatgaatgtAGTGTATTCAAGACACCACTAaacagccatttaaaaaaaaaaatcagttgagTGTGTTAAACCATGCACATGCTAAAGTGGAGTGCTTTTTTCTGTAGCATATTAAAGTAATCTGCAGCctagattgttttttttcttcatctctccaCTCCATCTTTTGAGTATAATTGTGTTCAGAATATGCATTTTCTGATAATATGGTATACTTACTGCTGTCTGTGTAATTGTGAGGTTCTTACCAATGCTCATGCTTATTTAGTCtttattatatgaaatatatagtCAGAATAATCCAAACGCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27788 True 984 lncRNA 0.38 1 7915609 7916592

Neighbor

gene id symbol gene type direction distance location
gxylt2 gxylt2,LOC107666964,LOC106565732 coding downstream 93551 7788563 ~ 7822058 (-)
ppp4r2b ppp4r2,LOC102785172,LOC107667031 coding downstream 129160 7778190 ~ 7786449 (-)
chl1b chl1,LOC100380675 coding downstream 545090 7282007 ~ 7370519 (-)
LOC113529215 LOC108271629,LOC108435695 coding downstream 722468 7066318 ~ 7193141 (-)
cntn4 cntn4,LOC108272185,LOC108435696,LOC107713523,LOC107667016,LOC106582845 coding downstream 956449 6800925 ~ 6959160 (-)
gpr27 gpr27 coding upstream 74622 7991214 ~ 7993623 (-)
gnat1 LOC108271583,LOC108424115,LOC102793896,LOC108231337 coding upstream 652755 8569347 ~ 8574762 (-)
inka1b LOC108271512,LOC108415076,LOC107723929,LOC107587643,LOC107708110,LOC107595459,LOC107666006 coding upstream 933390 8849982 ~ 8853110 (-)
gnai2b LOC108271854,LOC107587570,LOC103137272,LOC107723915,LOC103360398 coding upstream 943780 8860372 ~ 8915086 (-)
slc38a3b slc38a3,slc38a3b,LOC108271853,LOC108411719,LOC107666102,LOC107723914 coding upstream 1005532 8922124 ~ 8953564 (-)
G23427 NA non-coding downstream 815 7913696 ~ 7914794 (-)
G23426 NA non-coding downstream 8601 7906325 ~ 7907008 (-)
G23417 NA non-coding downstream 31796 7883528 ~ 7883813 (-)
G23330 NA non-coding downstream 205399 7705127 ~ 7710210 (-)
G23337 NA non-coding downstream 240275 7672700 ~ 7675334 (-)
G23424 NA non-coding upstream 8573 7925165 ~ 7925431 (-)
G23422 rybp,LOC108272260,LOC107599415,LOC107732045,LOC106511513,LOC107680715 non-coding upstream 10515 7927107 ~ 7928716 (-)
G23499 NA non-coding upstream 171175 8087767 ~ 8089618 (-)
G23605 NA non-coding upstream 447708 8364300 ~ 8365123 (-)
G23610 NA non-coding upstream 500782 8417374 ~ 8417993 (-)
G22591 NA other downstream 1435598 6479402 ~ 6480011 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 1706943 6205284 ~ 6208666 (-)
LOC117596222 NA other downstream 1838732 6074035 ~ 6076877 (-)
blcap blcap,bc10 other downstream 1950426 5956639 ~ 5965183 (-)
romo1 romo1,LOC102788570 other downstream 2379549 5532037 ~ 5536060 (-)
mitfa mitf,LOC108424034 other upstream 343893 8260485 ~ 8265229 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other upstream 427032 8343624 ~ 8351694 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other upstream 562782 8479374 ~ 8484181 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 1518914 9435506 ~ 9441845 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 1798924 9715516 ~ 9726051 (-)

Expression


Co-expression Network