G23499


Basic Information

Item Value
gene id G23499
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 8087767 ~ 8089618 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU27867
tgcagcaggtagtgttgacCTCAGGTTACTCAGGTTAGAGTTACGCACGTTCTCCATGTGttcacgtgggtttcctccgggctctctggtttcctcccacagtcctaaattggtgtgaatgtgtgtgtgcatagtgccctgagatggactggcatcccatagTGAATTCCAGTACGTCTCCAGAATGTCTTCAACTGGTTTCTATTCATTATTAGTTAAGTAAGATGAAGCCTTTTAAGGACaactacattattattacacgACTACATTATTAGAGAGCTAATTACAATAGCAACTATGAATACATTACTAGCAACTACAGTACTTGGTTACTTTTCAAAGAACTGTGGAAAAATAGTTAAATTAGCAATGCCTTTGGAATTTTGTTTGGTGTACATCTTCACACTGAATTTATAACACAACTCAATCATTATGGAGATGGGGCTTGCTTGAGGCCTGACAGATCATGATTTATTAGACTGTTGGAATATCAAAGACTAGTCAAACATTTAACGATCCAACAAACACTGAGTGAACATACACAGCTGGAGTAAACAAACTCCAACAAGTGCCAATTTTAACAGGCTCAGCACACTATGGCTACACAGCACTATTGTAGGGTTTCATGAATCTGACAATCATGAGCTGACAATCCAAAGCTTCAAATTCTAACTGAAACACTCCTATCGAgggccatatatatatatatatatatacacacatatttcttttttttaaatgtaagagAGTGCTAGTGATTTGACTTTCGTATGGAGATGTTTAAATGAAGCTTATGGTCTGCTTCCCCCAATCTAACTAGTGTGGCAAGATGAATTCCTCCGTCAGGCTTGAGATGATCAAACAGATTACAATTATTTCATCCTCCATATGTATTAATGAGCACTGTCTTTCATAGTTATGTTCCCTAACAAGAACTGATGACATGCCAAGCtccaggtttgttttttttttcctgccatgTTCTCAAAGGATTTGGAGCTTATTAGTTTATGAATTTGGAAGATTAATTTTTGACTGAGCTTTTCtatgggttaaaaaaataaaaaaataaaaaggagctTTGGAGTTTCAGCAAACGACCAATCAACACTTTTTCACTGAACTATCAAATAATCAACTAATCAGATGCTCATTAGCAAATCAGGagcaaatgattaaaatagGTGCAAACTagacaaaagcaaacaaaagccAGACTAGAAAACTAAAGCCACTATAAACAGTACGTTAGGTAATCTTAACAACCTACTTAATTATGGATATAGGTCACAGCTATGATGCTATGAGGGCATTATTAAAAGGcacaattttcatttatatgcACAGATATATGCATGTATAAATGTTCAAAAGGctagaaatatatatagaaGTGTGTGGAGGTCATATAGGATCTTCTCGGTTAATCACTTGTCTCTCTTTTACCTTTTAGAGCGCTGCATAAACCACAATGGCAACTCATAAAAGTCATAAAAGTGTCTAATTTAGAGAGGCAGCAAAATAATTGACAGGTGAGTAGGACCGCCTTCTTGCAGACACAATTCCTGATTGGTTAATAGCAGCTgagttaaaatgaaaaattggcTCATTACGAAGCCCAGGATTGTCACAAACTACACTGGAACTTCACCTATATGCATCCTAATAATCTATTATTCATCATTATCCATCATCAGGGATCTAAAGCTACATCTAgactgtaaagctgctttgtg

Function

NR:

description
PREDICTED: EF-hand domain-containing protein D1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27867 True 1736 lncRNA 0.45 2 8087767 8089618

Neighbor

gene id symbol gene type direction distance location
gpr27 gpr27 coding downstream 94144 7991214 ~ 7993623 (-)
gxylt2 gxylt2,LOC107666964,LOC106565732 coding downstream 265709 7788563 ~ 7822058 (-)
ppp4r2b ppp4r2,LOC102785172,LOC107667031 coding downstream 301318 7778190 ~ 7786449 (-)
chl1b chl1,LOC100380675 coding downstream 717248 7282007 ~ 7370519 (-)
LOC113529215 LOC108271629,LOC108435695 coding downstream 894626 7066318 ~ 7193141 (-)
gnat1 LOC108271583,LOC108424115,LOC102793896,LOC108231337 coding upstream 479729 8569347 ~ 8574762 (-)
inka1b LOC108271512,LOC108415076,LOC107723929,LOC107587643,LOC107708110,LOC107595459,LOC107666006 coding upstream 760364 8849982 ~ 8853110 (-)
gnai2b LOC108271854,LOC107587570,LOC103137272,LOC107723915,LOC103360398 coding upstream 770754 8860372 ~ 8915086 (-)
slc38a3b slc38a3,slc38a3b,LOC108271853,LOC108411719,LOC107666102,LOC107723914 coding upstream 832506 8922124 ~ 8953564 (-)
rbm5 rbm5,LOC108271979,LOC108433690,LOC107696464 coding upstream 883551 8973169 ~ 8982021 (-)
G23422 rybp,LOC108272260,LOC107599415,LOC107732045,LOC106511513,LOC107680715 non-coding downstream 159051 7927107 ~ 7928716 (-)
G23424 NA non-coding downstream 162336 7925165 ~ 7925431 (-)
G23428 NA non-coding downstream 171175 7915609 ~ 7916592 (-)
G23427 NA non-coding downstream 172973 7913696 ~ 7914794 (-)
G23426 NA non-coding downstream 180759 7906325 ~ 7907008 (-)
G23605 NA non-coding upstream 274682 8364300 ~ 8365123 (-)
G23610 NA non-coding upstream 327756 8417374 ~ 8417993 (-)
G23615 NA non-coding upstream 337503 8427121 ~ 8427325 (-)
G23617 NA non-coding upstream 340163 8429781 ~ 8430093 (-)
G23619 NA non-coding upstream 340862 8430480 ~ 8430694 (-)
G22591 NA other downstream 1607756 6479402 ~ 6480011 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 1879101 6205284 ~ 6208666 (-)
LOC117596222 NA other downstream 2010890 6074035 ~ 6076877 (-)
blcap blcap,bc10 other downstream 2122584 5956639 ~ 5965183 (-)
romo1 romo1,LOC102788570 other downstream 2551707 5532037 ~ 5536060 (-)
mitfa mitf,LOC108424034 other upstream 170867 8260485 ~ 8265229 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other upstream 254006 8343624 ~ 8351694 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other upstream 389756 8479374 ~ 8484181 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 1345888 9435506 ~ 9441845 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 1625898 9715516 ~ 9726051 (-)

Expression


Co-expression Network