G23621 (lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720)


Basic Information

Item Value
gene id G23621
gene name lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 8432140 ~ 8435785 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU28014
ATCATTTTGTCAGCTTACACTGTAGTCCATGGACAAAATTCTTAATATATTTCAGTGCACAACAGATAAACTGttttacaaaagaaagaaagaaactttaCATTCTATGTGAATACTGCCAAAGACATTTGTACAGTACTGGATCAAACTGCTACAGCATCAACTGACCCAAAAATAATCTTTGACAATATCTATGCTGTGCTATTAAAATATACTGAACATAAAAAGCACAGCTACTAACATTTCTCAGAAACTAAACAAAGCTGCAATATTGAgctaagaagaaaaaagtaataTGCTCTACTAAAATATCTGAATCGTTAGTCCATTTACACTGCCAATCAAAAGTTTCTGAATGCCTCTATTAAAACTTATggttaaacttaaaaaaaaaagggttcaaGGTAAATACTCTAGAATTAGAAATTCTAAGTAAGAAATATGTATAAATGAACtgagaaacactgaaaacattttattttattgggaaAAACTTAGCTCTAACTGGAAAAAAGCCTGGATAACTCTAATTAGGCACTTGTAGTAGAGGTGTTTgggggactgtttttttttttttttttttttttaatcccactcccgTCTGCTCCTGAAGAAAGTCTTACCAATCCAGCAGGCACTTGTGACTAATCCTGCCTGCTGCTGCAGACCAATGTATCCTGTTTTcgcaattatttatttattttttgcactgactcacaatattttctaaggaacttagttggttctatttcccaatatatatacaaattagtcatttaaaccatCGTCACCCTAAattaaaacagttactgaacattaataaactaaattaaTGAACACTGTGCCACGTGAGCACTCGGTATGCTCCCATGTTAAGGAATGTGGCCTTGCTTTCTCCTGTGAGCTACATATCTCATTGCCTGCTCCCAcgcacatgaaagtaaaaaccatCTGCTcccacagcttttttttttttgctgggttCTGCAGGATCCCAGTCTCGATGCACACTTATATAGGCTTACAGTCTTGCAGTAAGTAGTTCACTAAACAAGTGCACTTGCCTTCAATAAAGCATTATAATAAAGCAAAATTAACAtacttgtttaattttgtaaaactgtaataaaacataaaaaaaatgtgttcaaaaacttttgactggcagtgtagtTGTTACCAATCAGCAAAGCAGAGAATAAATCCACTTTCATTTTTGCACAAATAAGTCAAACGTGTCTTTGTGCTCCAAAACAACAGTTTGATGGACTTCACCACATGTAGTAGCTTCTTGTAGTGTCAACCTGGCTTGCCTTTGGCTCCAAGGAGCCATCTTTGTCCTTTTCAGTGTCTACATCCCACAGATTGATGAGAGGAGGGTATAGCTCGTTCAGAGGAATGGAAGAGGTTTTCTGCATGTACTTTTTGAGGGAGTGGTGGTAATTCTTCCTTTTCCATCTCTTGGCAATATAGACAGAGATGAACCCCAGGCTGATGATAGCCAAGATTGTACCCATGACAGCAGCAAGAGCTGTGTTGGTGCCTTGGTCGGATATTTCCACAGCAAAAGTGGAATGTTTAGTTGTGACATTTACACAAGACTTTTGAGTCTGTTGGTGGATATTGGAAACTGAGAGACAGACCTCATATTCAGTAGCTGGCTGAAGGTGTGTCAGATTATACTCATGGACATCTACAGGGACTCTGGCAGTATAGGTGATATGGGGGTTGTCAATCTTCATGGTGGCTGAAGACCACTTGAGGTTAGAAGTCATCACGTTGGAGTTTACCTTCCAGGACACCAGTATTGAGTGGGATTCTGTCTGTTTCACATAAATTTTCATAAGCTGAGTGCTGTCCAGGAGAGTACCATTGACCCGGATTGCAGTCACCCGAGTGTCAGCACCCTCTGTATTCTGAGCAACACAGGTGTAGCGACCAGAATCATCAGCCTGAATGTTTGATATATGTAGTGTTCCAGCACTGTTCAGATGGTACTTATCAGACACAGTATCCATCATGACCTTGTTACCTAATGGTGTCACCCAGTATATCTCTGGTTCAGGCTCCGCCATTGCACGACAGTCAAGGTCTACAGCCATGCCAATATCCAGGTTAAGATGGTTAGGGAAGGTATCATGGGATATCATTGGCAAACATTGCTCAGCAGATTCATGTGAAAGTACATCTCTCATGCGCTGGCCTCTGACCTCAGGTGGCATTGCACAATACATTGAAAGAGGTTCCATGAATCGTATGGATGTCTTATTTGAACTCATCCATTGGATAACACAATCACACCGTAGTGGGTTGCTGTGAATGCTGATCTCCCGCAGGTTGGGTAAAGATTCTACTGTTGCCAGGTAAACAGAGTTTAGAGCATTGTTGTTGAGCATGAGACTCTCAAGAGATGGAACATCACGGAATGCTAATCGGCTAATGTACGAGAGCTTGGGGTTATTGGTGGCCTCAAGTTTGGTCAATTCTGGGAGATTATCCAGGGCAAAACGATCAATAGAGACAAGCTCCCCCATATTATTAATACCAAGTTCTTTCAGCCtcaacatatttttaaagtCCCCCTCCTGGATTTTGTGTACAGGGTTTTTGTTCAAATCCAGAAATTTCAGGTTTGATAGTTTCTGTAGAGCATTTTGAGGAACATTCACAAGTTTATTATCATAGAAAGAGAGGCTCTCAAGATTGTCCAGTCCAACAAAAGCATTGCCTGGTATATCAGTAAGTTCCATCCCTGCTAATACCAAACTTCTAAGGTTAACAAGTGGTTTAAAATTCAAATCCAGTATACCAACCACAGGATTTTCCCCAATCATTAAGATCTCAAGGTTAGGGGTTGAATCAAACCAACGGCTATCAATAGCTTTGAGCTTGTTTGAGTTCAGGTGTAGCCTTAGCAAGTTGCGCAAACCAGCAAATGCATTAGGTTCAATGGAACTAATTTGATTGTGGTTTATATAAAGCTCCTGAAGGTTTGTAAGGTCCTGAAGGCTGAAGTCAGGCATCTCAACAATCTGGTTCTCCTCCAGATGGAGTGTGGTGAGCTGGGACATGTTGGTCAGGCCTATGTCACGAATGTTGGTAAAGTTGTTCTGGGAAAGATCCAGTTCAGTCAGGTTTAGCAACTGCTCCAGTTCCTCACTGGTTCTGGCAATGTAGTTACTCTGCAATAGCAACACTTGCGTATCACTTGACAGATTTCCAGGGATGCGTGTAAGACGAAGGTCATTGCAGTCTACAGTTATAGCTTCCCTGTAGGTGGACTGCGGTGTGAACCAGGGCCGGATTTCACATACACATAGTTGAGGACACTCTGTAGCTTCAACAGAAGAGAATGTAAGTAATGCCAGCAGAAAAATGAAGCAAGGCTGAACAACACAGAATGCAGTTCCTATAGCCATTTTTTAGCCACTCTGATCAAAAATGGGTTGGATTCCCAAAGAAGCAAAAAGATTTGGACTGTATGGTGAGACTTTCATCAAGTGTTCAGAAGTGCAACTGCATCAACCTTTTATCCTGTAAAAAACTGAGTAACAGTGGCACAGAAATTCAAAGCAGTAATTTCCCAGTAGATTCCCTGTAGACTCCGACCGGGTTGTTTCTGACTCACAGTCTGATATCAGGAAGT

Function

symbol description
lrrn1 Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in basal plate midbrain region; hindbrain neural keel; nervous system; neural plate; and somite. Orthologous to human LRRN1 (leucine rich repeat neuronal 1).

NR:

description
PREDICTED: leucine-rich repeat neuronal protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28014 True 3646 lncRNA 0.40 1 8432140 8435785

Neighbor

gene id symbol gene type direction distance location
gpr27 gpr27 coding downstream 438517 7991214 ~ 7993623 (-)
gxylt2 gxylt2,LOC107666964,LOC106565732 coding downstream 610082 7788563 ~ 7822058 (-)
ppp4r2b ppp4r2,LOC102785172,LOC107667031 coding downstream 645691 7778190 ~ 7786449 (-)
chl1b chl1,LOC100380675 coding downstream 1061621 7282007 ~ 7370519 (-)
LOC113529215 LOC108271629,LOC108435695 coding downstream 1238999 7066318 ~ 7193141 (-)
gnat1 LOC108271583,LOC108424115,LOC102793896,LOC108231337 coding upstream 133562 8569347 ~ 8574762 (-)
inka1b LOC108271512,LOC108415076,LOC107723929,LOC107587643,LOC107708110,LOC107595459,LOC107666006 coding upstream 414197 8849982 ~ 8853110 (-)
gnai2b LOC108271854,LOC107587570,LOC103137272,LOC107723915,LOC103360398 coding upstream 424587 8860372 ~ 8915086 (-)
slc38a3b slc38a3,slc38a3b,LOC108271853,LOC108411719,LOC107666102,LOC107723914 coding upstream 486339 8922124 ~ 8953564 (-)
rbm5 rbm5,LOC108271979,LOC108433690,LOC107696464 coding upstream 537384 8973169 ~ 8982021 (-)
G23619 NA non-coding downstream 1446 8430480 ~ 8430694 (-)
G23617 NA non-coding downstream 2047 8429781 ~ 8430093 (-)
G23615 NA non-coding downstream 4815 8427121 ~ 8427325 (-)
G23610 NA non-coding downstream 14147 8417374 ~ 8417993 (-)
G23605 NA non-coding downstream 67017 8364300 ~ 8365123 (-)
G23641 NA non-coding upstream 52729 8488514 ~ 8488758 (-)
G23643 NA non-coding upstream 53379 8489164 ~ 8489646 (-)
LOC117599540 NA non-coding upstream 75522 8511307 ~ 8516859 (-)
G23758 NA non-coding upstream 256154 8691939 ~ 8692150 (-)
G23952 NA non-coding upstream 473434 8909219 ~ 8990207 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 80446 8343624 ~ 8351694 (-)
mitfa mitf,LOC108424034 other downstream 166911 8260485 ~ 8265229 (-)
G22591 NA other downstream 1952129 6479402 ~ 6480011 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 2223474 6205284 ~ 6208666 (-)
LOC117596222 NA other downstream 2355263 6074035 ~ 6076877 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other upstream 43589 8479374 ~ 8484181 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 999721 9435506 ~ 9441845 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 1279731 9715516 ~ 9726051 (-)
G24516 NA other upstream 1427582 9863367 ~ 9868278 (-)
G24760 NA other upstream 2053508 10489293 ~ 10490295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033103 lrrn1 coding NC_007117.7 CM002890.2 43076516 ~ 43092175 (-)