G23977


Basic Information

Item Value
gene id G23977
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9020069 ~ 9021558 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU28428
CTGAGATGTTGCAGTCTAGTTATCTGAATCCtggaaaagaaacaaacactttTTACGATATTAACTTTGACGCTGGGCTTCTGCTCAGCCCTTATCATAAATCAGAGTCTAAGTTTTTTGTAAATGCTGCTGAGAGAGGCTGCAAGGACACAAAtcccaaacattttaaaagtaaaaactttACCCAAAGTAAAAAAACTTACCCAAATGCAGTCATTTTTATTGATGCGACATATTTTAAATCAGATAATTAGGGCCCAAACCTTAAAATAGGTGTGTTTACAATGGAATCTGGAGAATCTGAACTTTTCATTTTAGAACTACTATAAAGAtgcactcactgagcactttattaggaacactatacaaatactgggtagggcctctgTTTGTTCTCAAAaaagcctcaattcttcatgtcatggattccacaagatgttggaaacattgctttgagattctggtccttgttgacatgattgcatcatgcaattcgtGCAGATTTTTCAGTGCACTTTCCTGCTGTGAATCTctcgttctaccacatcccaaagatgttctagTGGATgaagatccggtgactgggaaggccactgaagaacattgaactcattgtcatgttcatgaaaccagtttgagaagatgataatgcattatcatgctggaagtagtcattagaagatgggtaaattgtggccatgaagggatgcatatgatcagcaacaatactcaaataggctgtggcattaaAGTGATGATTGACTGGtgttaacaggcccaaagtgtgtcaagaaaacattccccacaccattacactacctccaccagcctggactcttgacacaaggcaggttgggttcatggattcatgctTTTGGTGCTAAATTCTAACCCATCTGTGTGCCTCGTGATTCAttagaccaggctatgtttttacAGCCTTCAACTgtcccactgcagcctcagctttctgttcttggctgacagaagtggagcCCAATgtgatctgctgttgtagcccatccgcctcaaggttcaacgtgttgtgcattctgagatgcttttctgctcaccacaattgtacagagtgcgtatctgagttactatagcctttCAGTcagccattctccgttgacctctctcatcaacgaggcgtttccatccacagaactgacactcactggatgttttttctttattgcaccattctgagtaaacttcagagactgttgtgtgtgaaaatcccaggagatcagctactgcagaaatactcaaaccagcccgtctagcaccaacaatcatgccacgctCAAAATTACTTTgctcatatttttccccatgattgttgatgtgaacattacccgaagctgctgggccatatctgcatgattttctgcattgcactgctgctgatTGCCTGATTTGACAATTgtatgaatgagtaggtgtacaggtgttcctaataaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28428 True 1468 lncRNA 0.41 2 9020069 9021558

Neighbor

gene id symbol gene type direction distance location
rbm5 rbm5,LOC108271979,LOC108433690,LOC107696464 coding downstream 38048 8973169 ~ 8982021 (-)
slc38a3b slc38a3,slc38a3b,LOC108271853,LOC108411719,LOC107666102,LOC107723914 coding downstream 66505 8922124 ~ 8953564 (-)
gnai2b LOC108271854,LOC107587570,LOC103137272,LOC107723915,LOC103360398 coding downstream 104983 8860372 ~ 8915086 (-)
inka1b LOC108271512,LOC108415076,LOC107723929,LOC107587643,LOC107708110,LOC107595459,LOC107666006 coding downstream 166959 8849982 ~ 8853110 (-)
gnat1 LOC108271583,LOC108424115,LOC102793896,LOC108231337 coding downstream 445307 8569347 ~ 8574762 (-)
si:ch211-161c3.6 NA coding upstream 41967 9063525 ~ 9072606 (-)
mst1 mst1,LOC107666157 coding upstream 53354 9074912 ~ 9088027 (-)
cacna2d2a cacna2d2,cacna2d2a,LOC108271986,LOC108433686 coding upstream 76533 9098091 ~ 9318675 (-)
hyal1 LOC108271980 coding upstream 388796 9410354 ~ 9426556 (-)
hyal2a LOC108271981 coding upstream 407558 9429116 ~ 9432597 (-)
G23973 NA non-coding downstream 15557 9004289 ~ 9004512 (-)
G23952 NA non-coding downstream 29862 8909219 ~ 8990207 (-)
G23758 NA non-coding downstream 327919 8691939 ~ 8692150 (-)
LOC117599540 NA non-coding downstream 503210 8511307 ~ 8516859 (-)
G23643 NA non-coding downstream 530423 8489164 ~ 8489646 (-)
G23991 NA non-coding upstream 48848 9070406 ~ 9070769 (-)
G24073 NA non-coding upstream 258364 9279922 ~ 9286655 (-)
G24087 NA non-coding upstream 308922 9330480 ~ 9330828 (-)
LOC113527743 NA non-coding upstream 313110 9334668 ~ 9335327 (-)
G24185 NA non-coding upstream 388350 9409908 ~ 9410303 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 535888 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 668375 8343624 ~ 8351694 (-)
mitfa mitf,LOC108424034 other downstream 754840 8260485 ~ 8265229 (-)
G22591 NA other downstream 2540058 6479402 ~ 6480011 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 2811403 6205284 ~ 6208666 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 413948 9435506 ~ 9441845 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 693958 9715516 ~ 9726051 (-)
G24516 NA other upstream 841809 9863367 ~ 9868278 (-)
G24760 NA other upstream 1467735 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 1894484 10916042 ~ 10934164 (-)

Expression


Co-expression Network