G23991


Basic Information

Item Value
gene id G23991
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9070406 ~ 9070769 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU28447
CTGACCAAAAGAGGATGTGTACTCTTATAGACATGAGTAAAAGGCAAGCAAATTTGGTCAAGCGATAAGAGTATAGTGTTGAGCTCGAAAGAAGCAAATGTTTTCTGAGAAGAGGGAGGaaatgttttctgtgaagagaatGTGATCTGCAAAAAAGGGATTAATTTCTTCAACCCCGCAAACCCACCAATCTTGGAAGTGTGGGCGTGAAGAAAACAAGAGCACAAGGCTGGGGTCACGTCTTCCTGGAAACTGGTTATTGTTACTCATTCAGGACACCCTGAATAGCAGTTTGTACATACACTTAGTGGCCAATTTATTAGGAAATTGATGCTGTATAGCAGGGGTCTTCAATTTTATCCGC

Function

NR:

description
ras-dva small GTPase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28447 True 364 lncRNA 0.41 1 9070406 9070769

Neighbor

gene id symbol gene type direction distance location
gnb1b gnb1b,gnb1,gnb1a,LOC108272010,LOC105895937,LOC107385217,LOC100703896 coding downstream 33073 9012676 ~ 9037333 (-)
rbm5 rbm5,LOC108271979,LOC108433690,LOC107696464 coding downstream 88385 8973169 ~ 8982021 (-)
slc38a3b slc38a3,slc38a3b,LOC108271853,LOC108411719,LOC107666102,LOC107723914 coding downstream 116842 8922124 ~ 8953564 (-)
gnai2b LOC108271854,LOC107587570,LOC103137272,LOC107723915,LOC103360398 coding downstream 155320 8860372 ~ 8915086 (-)
inka1b LOC108271512,LOC108415076,LOC107723929,LOC107587643,LOC107708110,LOC107595459,LOC107666006 coding downstream 217296 8849982 ~ 8853110 (-)
mst1 mst1,LOC107666157 coding upstream 4143 9074912 ~ 9088027 (-)
cacna2d2a cacna2d2,cacna2d2a,LOC108271986,LOC108433686 coding upstream 27322 9098091 ~ 9318675 (-)
hyal1 LOC108271980 coding upstream 339585 9410354 ~ 9426556 (-)
hyal2a LOC108271981 coding upstream 358347 9429116 ~ 9432597 (-)
rps10 rps10,LOC107595410,LOC102793608 coding upstream 397771 9468540 ~ 9471356 (-)
G23977 NA non-coding downstream 48848 9020069 ~ 9021558 (-)
G23973 NA non-coding downstream 65894 9004289 ~ 9004512 (-)
G23952 NA non-coding downstream 80199 8909219 ~ 8990207 (-)
G23758 NA non-coding downstream 378256 8691939 ~ 8692150 (-)
LOC117599540 NA non-coding downstream 553547 8511307 ~ 8516859 (-)
G24073 NA non-coding upstream 209153 9279922 ~ 9286655 (-)
G24087 NA non-coding upstream 259711 9330480 ~ 9330828 (-)
LOC113527743 NA non-coding upstream 263899 9334668 ~ 9335327 (-)
G24185 NA non-coding upstream 339139 9409908 ~ 9410303 (-)
LOC113532565 NA non-coding upstream 523727 9594496 ~ 9596485 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 586225 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 718712 8343624 ~ 8351694 (-)
mitfa mitf,LOC108424034 other downstream 805177 8260485 ~ 8265229 (-)
G22591 NA other downstream 2590395 6479402 ~ 6480011 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 2861740 6205284 ~ 6208666 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 364737 9435506 ~ 9441845 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 644747 9715516 ~ 9726051 (-)
G24516 NA other upstream 792598 9863367 ~ 9868278 (-)
G24760 NA other upstream 1418524 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 1845273 10916042 ~ 10934164 (-)

Expression


Co-expression Network