tusc2a (LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521)


Basic Information

Item Value
gene id tusc2a
gene name LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9435506 ~ 9441845 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU28673
ggagaaagaggaagaaggacGAAGCTGACGAGTTTTTAGTGTAAACATGGCAGTGGCGAAAAGCTAAAGATGACATGAGTACAgcttgAGCTACAGAGaactgtacctgtcagtcctaTTTAATGATGCTCTTTCATTAAAGATGGGAGGCAGTGGATCCAAAGCTAAAGGAGTCTGGCCTTTCACTGGCTCAGAGGCTAGTGGAGATTCTTCTGAGGTCAATGATCAGTCTTTAGCCCGAATGTGTGGCCACAGAAATGCAACGCCGTTTGTCTTTACAAGAAGGagCTCTCTGTATTACGATGAGGATGGAGATCTGGCTCATGAGTTCTATGAAGAGACAGTGGTGACTAAAAACGGGCGAAAGAAGGCTAAGTTGAAGAGGATCCACAAGAACCTCATACCTCAGGGGATTGTGAAACTGGATCATCCCCGAATCCATGTTGACTTCCCGGTCATTATTTGTGAAATATAAAACCACAGATATGAGACTAGGAGATGTTTCACCAATCAAACCTTTCACCTCTCCACTACAATCCTGTCTTTGCTGATGGGCATTAGTGGCTCCCAGTAACATCATAGTTGTTTCATAGTGAGCCAGACTGCCCTCGTGTGGCTGGAGGGACCtgcagcagcttttttttttttttcttactacaGAGGAAACCCCTCAATGTAAAATTTGAACAGCAGGCTGACTTGAAGGACTGTTTGTCTCCTTTTTGTGTACTGCTCGTCAGTAAATTTGTTCCTGTAAATAAAGGAGTGAATATAGAGTACTAAAATGCAGGGATTGCAGGGTTTATATTTTTGCTGACTGAGCatggcatgtttttattttgttgtgttgtataTAACTATTCTGTCTGCCTTTGTTTGTTGTATTTAAGCCCATAATAATTATTTGATG
>XM_026937121.2
TGCTAACCGcggtgaaaaaacaaaaacgaaaagaaggagaaagaggaagaaggacGAAGCTGACGAGTTTTTAGTGTAAACATGGCAGTGGCGAAAAGCTAAAGATGACATGAGTACAgcttgAGCTACAGAGaactgtacctgtcagtcctaTTTAATGATGCTCTTTCATTAAAGATGGGAGGCAGTGGATCCAAAGCTAAAGGAGTCTGGCCTTTCACTGGCTCAGAGGCTAGTGGAGATTCTTCTGAGGTCAATGATCAGTCTTTAGCCCGAATGTGTGGCCACAGAAATGCAACGCCGTTTGTCTTTACAAGAAGGagCTCTCTGTATTACGATGAGGATGGAGATCTGGCTCATGAGTTCTATGAAGAGACAGTGGTGACTAAAAACGGGCGAAAGAAGGCTAAGTTGAAGAGGATCCACAAGAACCTCATACCTCAGGGGATTGTGAAACTGGATCATCCCCGAATCCATGTTGACTTCCCGGTCATTATTTGTGAAATATAAAACCACAGATATGAGACTAGGAGATGTTTCACCAATCAAACCTTTCACCTCTCCACTACAATCCTGTCTTTGCTGATGGGCATTAGTGGCTCCCAGTAACATCATAGTTGTTTCATAGTGAGCCAGACTGCCCTCGTGTGGCTGGAGGGACCtgcagcagcttttttttttttttcttactacaGAGGAAACCCCTCAATGTAAAATTTGAACAGCAGGCTGACTTGAAGGACTGTTTGTCTCCTTTTTGTGTACTGCTCGTCAGTAAATTTGTTCCTGTAAATAAAGGAGTGAATATAGAGTACTAAAATGCAGGGATTGCAGGGTTTATATTTTTGCTGACTGAGCatggcatgtttttattttgttgtgttgtataTAACTATTCTGTCTGCCTTTGTTTGTTGTATTTAAGCCCATAATAATTATTTGATGTACAGTAATTTATGAAAGTTAAGatactttaataaaaataaactggtATCAATTGTT
>XM_026937191.2
tacaccggatgcccttcctgatgcaactctccccagttttatccaggcttgggactggcactcagagcacactgttgcacgcagtggctggggttggttccctggcccgGAGTTGAACCCGGACCACAGCGgcttgAGCTACAGAGaactgtacctgtcagtcctaTTTAATGATGCTCTTTCATTAAAGATGGGAGGCAGTGGATCCAAAGCTAAAGGAGTCTGGCCTTTCACTGGCTCAGAGGCTAGTGGAGATTCTTCTGAGGTCAATGATCAGTCTTTAGCCCGAATGTGTGGCCACAGAAATGCAACGCCGTTTGTCTTTACAAGAAGGagCTCTCTGTATTACGATGAGGATGGAGATCTGGCTCATGAGTTCTATGAAGAGACAGTGGTGACTAAAAACGGGCGAAAGAAGGCTAAGTTGAAGAGGATCCACAAGAACCTCATACCTCAGGGGATTGTGAAACTGGATCATCCCCGAATCCATGTTGACTTCCCGGTCATTATTTGTGAAATATAAAACCACAGATATGAGACTAGGAGATGTTTCACCAATCAAACCTTTCACCTCTCCACTACAATCCTGTCTTTGCTGATGGGCATTAGTGGCTCCCAGTAACATCATAGTTGTTTCATAGTGAGCCAGACTGCCCTCGTGTGGCTGGAGGGACCtgcagcagcttttttttttttttcttactacaGAGGAAACCCCTCAATGTAAAATTTGAACAGCAGGCTGACTTGAAGGACTGTTTGTCTCCTTTTTGTGTACTGCTCGTCAGTAAATTTGTTCCTGTAAATAAAGGAGTGAATATAGAGTACTAAAATGCAGGGATTGCAGGGTTTATATTTTTGCTGACTGAGCatggcatgtttttattttgttgtgttgtataTAACTATTCTGTCTGCCTTTGTTTGTTGTATTTAAGCCCATAATAATTATTTGATGTACAGTAATTTATGAAAGTTAAGatactttaataaaaataaactggtATCAATTGTT
>XM_034310483.1
acgaaaagaaggagaaagaggaagaaggacGAAGCTGACGAGTTTTTAGTGTAAACATGGCAGTGGCGAAAAGCTAAAGATGACATGAGTACAATGGGAGGCAGTGGATCCAAAGCTAAAGGAGTCTGGCCTTTCACTGGCTCAGAGGCTAGTGGAGATTCTTCTGAGGTCAATGATCAGTCTTTAGCCCGAATGTGTGGCCACAGAAATGCAACGCCGTTTGTCTTTACAAGAAGGagCTCTCTGTATTACGATGAGGATGGAGATCTGGCTCATGAGTTCTATGAAGAGACAGTGGTGACTAAAAACGGGCGAAAGAAGGCTAAGTTGAAGAGGATCCACAAGAACCTCATACCTCAGGGGATTGTGAAACTGGATCATCCCCGAATCCATGTTGACTTCCCGGTCATTATTTGTGAAATATAAAACCACAGATATGAGACTAGGAGATGTTTCACCAATCAAACCTTTCACCTCTCCACTACAATCCTGTCTTTGCTGATGGGCATTAGTGGCTCCCAGTAACATCATAGTTGTTTCATAGTGAGCCAGACTGCCCTCGTGTGGCTGGAGGGACCtgcagcagcttttttttttttttcttactacaGAGGAAACCCCTCAATGTAAAATTTGAACAGCAGGCTGACTTGAAGGACTGTTTGTCTCCTTTTTGTGTACTGCTCGTCAGTAAATTTGTTCCTGTAAATAAAGGAGTGAATATAGAGTACTAAAATGCAGGGATTGCAGGGTTTATATTTTTGCTGACTGAGCatggcatgtttttattttgttgtgttgtataTAACTATTCTGTCTGCCTTTGTTTGTTGTATTTAAGCCCATAATAATTATTTGATGTACAGTAATTTATGAAAGTTAAGatactttaataaaaataaactggtATCAATTGTT

Function

NR:

description
tumor suppressor candidate 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28673 False 910 TUCP 0.42 4 9435563 9441810
XM_026937121.2 False 1002 mRNA 0.41 4 9435506 9441845
XM_026937191.2 True 1015 mRNA 0.43 4 9435506 9440560
XM_034310483.1 False 918 mRNA 0.41 4 9435506 9441820

Neighbor

gene id symbol gene type direction distance location
hyal2a LOC108271981 coding downstream 2909 9429116 ~ 9432597 (-)
hyal1 LOC108271980 coding downstream 8950 9410354 ~ 9426556 (-)
cacna2d2a cacna2d2,cacna2d2a,LOC108271986,LOC108433686 coding downstream 116831 9098091 ~ 9318675 (-)
mst1 mst1,LOC107666157 coding downstream 347479 9074912 ~ 9088027 (-)
si:ch211-161c3.6 NA coding downstream 362900 9063525 ~ 9072606 (-)
rps10 rps10,LOC107595410,LOC102793608 coding upstream 26695 9468540 ~ 9471356 (-)
LOC113530144 LOC108271967,LOC108433664,LOC107595455,LOC107724522,LOC107744410,LOC107587644,LOC107666045,LOC107696418 coding upstream 58988 9500833 ~ 9509764 (-)
ilrun c11h6orf106,cunh6orf106,zgc:101577,LOC107724532,LOC107595408,LOC107666165 coding upstream 77533 9519378 ~ 9536904 (-)
snrpc snrpc,LOC107587645,LOC107696417,LOC107666039 coding upstream 128918 9570763 ~ 9576988 (-)
sys1 sys1,LOC107587582,LOC107744372,LOC106565403 coding upstream 142076 9583921 ~ 9587318 (-)
G24185 NA non-coding downstream 25203 9409908 ~ 9410303 (-)
LOC113527743 NA non-coding downstream 100179 9334668 ~ 9335327 (-)
G24087 NA non-coding downstream 104678 9330480 ~ 9330828 (-)
G24073 NA non-coding downstream 148851 9279922 ~ 9286655 (-)
G23991 NA non-coding downstream 364737 9070406 ~ 9070769 (-)
LOC113532565 NA non-coding upstream 152651 9594496 ~ 9596485 (-)
LOC113532571 NA non-coding upstream 170535 9612380 ~ 9615583 (-)
LOC113532556 NA non-coding upstream 173742 9615587 ~ 9620959 (-)
G24260 NA non-coding upstream 194009 9635854 ~ 9636519 (-)
G24268 NA non-coding upstream 233677 9675522 ~ 9675739 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 951325 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 1083812 8343624 ~ 8351694 (-)
mitfa mitf,LOC108424034 other downstream 1170277 8260485 ~ 8265229 (-)
G22591 NA other downstream 2955495 6479402 ~ 6480011 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 3226840 6205284 ~ 6208666 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 273671 9715516 ~ 9726051 (-)
G24516 NA other upstream 421522 9863367 ~ 9868278 (-)
G24760 NA other upstream 1047448 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 1474197 10916042 ~ 10934164 (-)
kif5ab kif5a other upstream 2000626 11442471 ~ 11485469 (-)

Expression


Co-expression Network