LOC113532556


Basic Information

Item Value
gene id LOC113532556
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9615587 ~ 9620959 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU28742
TCCCATATTGTTAGAAAAATTCAAACCGTACTTGAGAAGTGAAGACTTTGCATCGTCTGATACTGACTGCAACTTCATCAGATTTCATCCATGACTGCTTTCGTGTATTCACAGCAAGGCTGAGCTCAATCATTTCATACAACTTGTTTGTATAATGGCGGTCAACAAAGCACTTCACAAAGATGAGGTAAAGGAACGTATATCGTTTACTGTAAAAGCAACAAAATTCATTTCGTGTGTCGTCTAATAAATTGCAATGTAGAGATCTTTAAAACAAACGGTAAGTGCCTTTTGACTTATAAACAACAAAGCTGACAGGATAAACGTAAAGATAACATAGTCTATTTCTCTTGGCACTGAGAGCTGTTAAGGTAATCTCTCTTCTTGGGCTGATATTTAACTAGTATTGCTGAACCAAATGTGTAAAGAGAGGAATTAACTCTTCTAATGCAACAGGCAGCTTTGGAAAACAATAGTATTGATGGAATTAGCGTAATATAACAGATCTATAACGGAAAGcgtgaaaaaagaagaaaccgTGAATTAAGTTGATTTATACTGATCCATTCTCTAACATTACAGCTGTCGATGATGCTTTCAAGTGTTTAATATCTAAACAGCAGCTTATTTTTGATCTCACTAATCATGCATTACATGCGTACAAAAATGTAGAGTTCATCATTTGAGGTGCATATACAGAAAATACAAGATTTTGTTATGTACGCACATCCCTTAAATTCACATATATTTCCTTCATAGGAATTTCTATTCGTATTTCAGATAAGTCTGCTGGATTTGTGTAATGCAGATTTTTCGTGCGTGAACAAGTGGCTGTTCAGTACTTATTGCCAGCATAGTGTTTACAAGTACGTTCTACACAACACATAGCAGGATTAACTACTTTATGCAGTTTTTCTATAGCATAAAAAGGATCAGTCGTCCAACCATTACCATGCTATCACAAAGCGGAGAAAAAATGGGCGTATAATGTTGTCCAAaaaatggagatggagagagcaggagagataAAGGGCGGGGTGACAGGCAGAAAATGAGAAGGATTTCCCCTCCCCTCTGCTATCCTCAGATGAACTTGTCGTGTTACTTCATGATATTTTCTTTCAGGCCTGCCATCTCTACTTCCTGCTATTTTTGTGTCCCCTCCTCccccctccctctttctttctgcctctgTCTTTGACTATTAGTGGTGTGGTAACCAGGAATAAAGTCACACTTCCTTTATCAGGAAACACATTTCAGCTATGGAGTTTGATTAAAACTGAActataccatttttttttctatttggaAAGATTCCTAAACCTTGgatatgtatttattatgtgtCTAGCTGAAACGTTTATAGGTGTTGGTAATGGTTCCAGTATGATTTTAGACAATGTTAGTCAAATTCACTAAAATGTATCCAGAGATACAGGAGTATCAGCTTCAGTACTGGAGGAATTTCCTCTTTCCTGAACAGATATAGCATTACGGATCATTTTCAGAAACAAGAATATGACTTCTGTGAAGGTTTTGGTGTCTAATCTGACACCACAGAGTAACACTGACAAACCTTAATTTACAGCTTTTGCCCATGTGCAGAATGAGCTGTTTTACTACAGCAAAAGAAGAAATTAGTCTTGATAGCTTCTTTTGTTTGTTGAGCCACTATCAGAGTGATAAGAGATGAACTTGGAGACCTCCACGCACACAGGACAGAGTCAAACTAAGTCGGCAGAAGGCAAACTTCCTGTTTAGAGATGCTATTTTTGTGTGCAGGGCGGTTTCCCTGTTACTGCTGAATGATAGAAAGACTAACAAAAATTAACCCTTGTAATATTATGGCTTTGTTTAGTGGCagaaaaaatgaatcaattccATCTGAAAATCTACAGCTTTGAACAGTGCAAAAGATTACTGCATTTGAATATATGATGGATGAATATGTTTATTCAGAAACTTATTAGTGGATTGCTAAATCAGCCTCCATATTTATTTTGTCACAGCAAAATCAGTGATTGGTGTTCGAATGGGTTTGTATATTGAACATGAACAGTTAAAGTAATCAGTGGTTCAGTTCAAAACTTGCAAATCTATTGATCCAGGCAGTTTCACGAGGGCTCTAACAGGGCTGTTGTAAAAACCTGTTCGCTTATCACTTTCTCTTAATAAAAGGTCAAAGGTGAAACAGCCTTCAATTCGGTTCATGTTGAAAATGTTACACAAGGAACCTTGAACAATTTGTTTGCACAGTAAAAAGCTGCCAAATAATAGTATtacactgtcatttttttaatctgcatttTAAGCCAATATTTTAGAATAGGTGCAAAAAGATTTCAGATACAAATAAATGAGAAGATAAATATCCATTTGAGTATAATTTCAATTATTTGTTCAGGAAAACATTGTACAGCTAACATATAATATCTCTCACCAAAGTGTATGATGACATAGGAAGTACTGCGTGCAGTGACCCATGAGCTTCAGTGAGACATGAAtcataaaaaaacaactcaacAACTCAACTCAAAAAAAAGTAGGCTACATCAAAACACTGCACAGACTGTAAGTCAAATAAACaatgttttgaaagaaaatactTTTAGAAGAAATCTGGAAAGATTTGCATTATATGCATTACACTTCTTAAAGACAATTAGGTGACACCATAAGGCGTTATTAAATTGCCTGCATATTAAATATGCCTGCATTAATAAATTGCTCTTTGCACTTGAGGGGTTAAGGCCTAAAAACTGCCTCTTAAATGGTGAGTGCTTATGAGCAAAATACCAACTGTTCAAGTTTATAGTTTCTGTCCATCTATTTTAAATCTGCATTCTGAAGCAGTGTTAGCTGCATTCTTCTTTGACAGCAGTTTTCAAAATGGTCTGATTTtgatatttgcattttatattgcAGACTTGATACCATTCACCATCGAACTGATTCAACATCTCAATTAAGAGGTTTCTATTTGTCCTCTTCAAGCACCACCCCCCGCACTCATGCTGTTCTTTCCACCCTATCGAGTAGAGGGCCGCCTTTTCCTCCGCCAACTGCCATGCCAAAACATTTCAATCACTGCCCCCATTAATTAGGCCAAAGAAGAATTTTGCATGTTAATGAGCTACCATGGTGCTTTTCACTGTCTCTGGTTCACATGCTAATTTATGCAAAGTGACAGGGCAACTGCCCTACCCCTCCTTGCATGCCAGTCAATTGTTTGGACTGCTCCCATGACCCTTGTCTGCCACCCTCCTTGGGCACAGCTTCATGCCAGAGCTGGGCATTGTCTAACTGCCTCAGCTGCCACTGCAGACACCGAGTTAATG
>XR_004577035.1
ctctctctgtctctctctctcacacacattctgctactgctgctgcctCTGTTGTCCTCAAATTCTTTTAACCATAACAGACTGTTGGAGTGGACTACTGTTAACTCTGGAAAggcttttctgtatttttttgcaACGGGGGTAGAGTGAATACGTGTTGGCTGCAGAGGGGAGGAGCTGAGGAGTACAGTGGGGAGagcaaaataaatgaacatacaACAAAAGCGAACGAAGGGGGCCGTGACATCACACACTGAGCTGTCCTGGACAATGCCTGAGATGAGGACGAGGGACGGCAAGCATAGCACTTGGCTGTGAaactctctttttatttctctctctcaacaccTTCGTCCCAGGAAGAGGGCAAAGTACACCTTTTTGGCAGTCACACTGGATTATTTTGGTGACACTTCTCTCTCTTGGCCGGCTGGCCGCCTGGGCTCTGAGCCCCTTTTCTCGCCACAGCTGAACAGGATTCATCACAGGAACAACTTACTCCTGCaagtcactttttaaaaaaaaaaaatctcacatttAACATTCTTGCAGACTCAGCGTGTTGGTGTCCTAACCAAAAAGAGGCCAAAAGTCTAGGACTGTGGACTGGCGGATTCTCGCTCACCTACAAAAGTTTCACATTTGGATTGTTTTGTAACTTTTtccaaagacttttttttcccaaaacgATTTCTTTCCAAAGTTAGAGCCTGTATTGCTGCGGGTGTGCTACCCAAAAGAAAATTTTACTGTTATGTCTAATAGGGCGCGAACGTAATAGGGAAATTCATACAAAAAGCACAGGCAACACCAGGGCAGCTAAAGACGCTGCGATGACTTCTGTAGAAGGGGAACAGAGAGGCATGTACTACCTGGGACGATTGCCAAATGCTGACAAAAGACTtcactgcactctctctctctgggagaAATCATAGTTCTTTATTCTAAGGGTGGCTTAAATCACTGGCATTATCTCTTAATTCGAACCTGCTCCTAGAACAGAAGCCAAAGCTTGTGGCCCTGGCAGGCGAACGCCGCGTAGTGCTCGAGATGAAATGGTGAAGGGAACCCTACTTTGCCTGGCAACTCTTGCAAAGACATAAACGCAGTTGCTCTCTCTTACCCAAAAGTTAAGACGTGTCCCAAAAGTATTACTAccccaaattattttttttcttcccttctcACACGGCTGTGACCTCATGCTGTCTCTTTCCCATTAGTTTCCTGGCATCATGGTCGTAGTGGGCAGGGAGATAGGAGGGCATGGCTGCAGACTGTTACTGTTGGCTTGGTTAGTTTCTCtcgttttctcatttttctctgtcCTCTTTTGCCAGCGAATTATCAAGACACAGAAATAATCTCTCATCTCCCTCTTCTTCTACCTCCTCCTTCCCTGCCTACCCACCCGCCCATCGTGCTCCTTAGCCCTTGGCCCGAGTCGTTGTGCCGTCCTGCAGAATTCATACTCAGACTTGATACCATTCACCATCGAACTGATTCAACATCTCAATTAAGAGGTTTCTATTTGTCCTCTTCAAGCACCACCCCCCGCACTCATGCTGTTCTTTCCACCCTATCGAGTAGAGGGCCGCCTTTTCCTCCGCCAACTGCCATGCCAAAACATTTCAATCACTGCCCCCATTAATTAGGCCAAAGAAGAATTTTGCATGTTAATGAGCTACCATGGTGCTTTTCACTGTCTCTGGTTCACATGCTAATTTATGCAAAGTGACAGGGCAACTGCCCTACCCCTCCTTGCATGCCAGTCAATTGTTTGGACTGCTCCCATGACCCTTGTCTGCCACCCTCCTTGGGCACAGCTTCATGCCAGAGCTGGGCATTGTCTAACTGCCTCAGCTGCCACTGCAGACACCGAGTTAATGTGAGATCTggggtttatttaaaataatagcaAAAGATCAGATCTGCAGATCACTTCAGAATTACAATCACTTCAGAGTATTAATGATTACCATCATTAAACCTGCATATTACAAAACTAAAGACAGAATTTAACTTTtttgacattatatatatatatatatatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28742 True 3341 lncRNA 0.37 1 9615754 9619094
XR_004577035.1 False 2059 lncRNA 0.45 3 9615587 9620959

Neighbor

gene id symbol gene type direction distance location
sys1 sys1,LOC107587582,LOC107744372,LOC106565403 coding downstream 28269 9583921 ~ 9587318 (-)
snrpc snrpc,LOC107587645,LOC107696417,LOC107666039 coding downstream 38599 9570763 ~ 9576988 (-)
ilrun c11h6orf106,cunh6orf106,zgc:101577,LOC107724532,LOC107595408,LOC107666165 coding downstream 78683 9519378 ~ 9536904 (-)
LOC113530144 LOC108271967,LOC108433664,LOC107595455,LOC107724522,LOC107744410,LOC107587644,LOC107666045,LOC107696418 coding downstream 105823 9500833 ~ 9509764 (-)
rps10 rps10,LOC107595410,LOC102793608 coding downstream 144231 9468540 ~ 9471356 (-)
tnni1b tnni1,LOC106582713,LOC106566026,LOC103040607 coding upstream 122072 9743031 ~ 9749764 (-)
csrp1b csrp1,LOC108441585,LOC104918388,LOC101487148 coding upstream 131662 9752621 ~ 9756596 (-)
LOC113530316 LOC108271764 coding upstream 321096 9942055 ~ 9954145 (-)
ube2c ube2c,LOC107744406 coding upstream 357914 9978873 ~ 9982851 (-)
LOC113534196 dnttip1 coding upstream 362106 9983065 ~ 9992886 (-)
LOC113532571 NA non-coding downstream 4 9612380 ~ 9615583 (-)
LOC113532565 NA non-coding downstream 19102 9594496 ~ 9596485 (-)
G24185 NA non-coding downstream 205284 9409908 ~ 9410303 (-)
LOC113527743 NA non-coding downstream 280260 9334668 ~ 9335327 (-)
G24087 NA non-coding downstream 284759 9330480 ~ 9330828 (-)
G24260 NA non-coding upstream 14895 9635854 ~ 9636519 (-)
G24268 NA non-coding upstream 54563 9675522 ~ 9675739 (-)
G24572 NA non-coding upstream 317297 9938256 ~ 9939043 (-)
G24611 NA non-coding upstream 530858 10151817 ~ 10152165 (-)
G24617 NA non-coding upstream 540073 10161032 ~ 10161241 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 173742 9435506 ~ 9441845 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 1131406 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 1263893 8343624 ~ 8351694 (-)
mitfa mitf,LOC108424034 other downstream 1350358 8260485 ~ 8265229 (-)
G22591 NA other downstream 3135576 6479402 ~ 6480011 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 94557 9715516 ~ 9726051 (-)
G24516 NA other upstream 242408 9863367 ~ 9868278 (-)
G24760 NA other upstream 868334 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 1295083 10916042 ~ 10934164 (-)
kif5ab kif5a other upstream 1821512 11442471 ~ 11485469 (-)

Expression


Co-expression Network