G24268


Basic Information

Item Value
gene id G24268
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9675522 ~ 9675739 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU28757
ttcacttgcatcaacacctctttggatggcatattgagagttcccatgaacagctaccaaatgcaaattcaacacttggaatcagctccagaccttttatctccttaatttgtcatgatataaggaggaaacaggccacagctagccatgaaactgcttatcagtcaattgtcccattacttttgagcctgtgaaaatggaggaactctgtaaaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28757 True 218 lncRNA 0.40 1 9675522 9675739

Neighbor

gene id symbol gene type direction distance location
sys1 sys1,LOC107587582,LOC107744372,LOC106565403 coding downstream 88204 9583921 ~ 9587318 (-)
snrpc snrpc,LOC107587645,LOC107696417,LOC107666039 coding downstream 98534 9570763 ~ 9576988 (-)
ilrun c11h6orf106,cunh6orf106,zgc:101577,LOC107724532,LOC107595408,LOC107666165 coding downstream 138618 9519378 ~ 9536904 (-)
LOC113530144 LOC108271967,LOC108433664,LOC107595455,LOC107724522,LOC107744410,LOC107587644,LOC107666045,LOC107696418 coding downstream 165758 9500833 ~ 9509764 (-)
rps10 rps10,LOC107595410,LOC102793608 coding downstream 204166 9468540 ~ 9471356 (-)
tnni1b tnni1,LOC106582713,LOC106566026,LOC103040607 coding upstream 67292 9743031 ~ 9749764 (-)
csrp1b csrp1,LOC108441585,LOC104918388,LOC101487148 coding upstream 76882 9752621 ~ 9756596 (-)
LOC113530316 LOC108271764 coding upstream 266316 9942055 ~ 9954145 (-)
ube2c ube2c,LOC107744406 coding upstream 303134 9978873 ~ 9982851 (-)
LOC113534196 dnttip1 coding upstream 307326 9983065 ~ 9992886 (-)
G24260 NA non-coding downstream 39003 9635854 ~ 9636519 (-)
LOC113532556 NA non-coding downstream 54563 9615587 ~ 9620959 (-)
LOC113532571 NA non-coding downstream 59939 9612380 ~ 9615583 (-)
LOC113532565 NA non-coding downstream 79037 9594496 ~ 9596485 (-)
G24185 NA non-coding downstream 265219 9409908 ~ 9410303 (-)
G24572 NA non-coding upstream 262517 9938256 ~ 9939043 (-)
G24611 NA non-coding upstream 476078 10151817 ~ 10152165 (-)
G24617 NA non-coding upstream 485293 10161032 ~ 10161241 (-)
G24620 NA non-coding upstream 492472 10168211 ~ 10168469 (-)
G24623 NA non-coding upstream 495231 10170970 ~ 10171175 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 233677 9435506 ~ 9441845 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 1191341 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 1323828 8343624 ~ 8351694 (-)
mitfa mitf,LOC108424034 other downstream 1410293 8260485 ~ 8265229 (-)
G22591 NA other downstream 3195511 6479402 ~ 6480011 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 39777 9715516 ~ 9726051 (-)
G24516 NA other upstream 187628 9863367 ~ 9868278 (-)
G24760 NA other upstream 813554 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 1240303 10916042 ~ 10934164 (-)
kif5ab kif5a other upstream 1766732 11442471 ~ 11485469 (-)

Expression


Co-expression Network