tnnt2b (tnnt2,LOC108441587,LOC107696448,LOC107595452)


Basic Information

Item Value
gene id tnnt2b
gene name tnnt2,LOC108441587,LOC107696448,LOC107595452
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9715516 ~ 9726051 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU28828
ctgagtgtgtgaatgtgtgtgtgcatgatgccctgtgatggactggtgcccTATCCAGGGcgtgttcctgcctcacacccactgttcctgggataggctacAGATTCACAGAGACCacgaccaggataaaacagttactgaagatgaatgaattaatcattatcattaattaCTCAGTCACTACCCAGTGAAGGGCTTTATTATACTGTGGTCAAGACATGCTTTCATGTTGATTGACACTTGTATTTTATtctgaaaatgaggaaaaacgACGGACAGaaagagcagagcagcagagaATCCgtgcagaaaaagagagagagcgtcAGAACAAGCTGGCGGAAGAAAAGGCAcggaaagaggaggaagaggcaaAGAAAAAAGCTGAAGATGATGCCAAGAAAAAGAAGGTTCTGACAAGTTTACAGTTCAGCGGATACATGCAGAGGACAGACAAGCGGGGAGGACAGaggaaacaaacagagagagagaagaagagaaaaattcTTAGTGAGCGGCGTAAAGAGCTCAACGTTGAAGATCTGAATGCTGAGAAGCTCAGAGAGAAAGCCAACGAACTTTGGAAATGGATGTACCAACTTGAGGCAGAGAAATTTGAACtgcaatacaaatatatacatcaGAAATATGAGATCACCGTTCTGAGAAACAGGGTCAGCGACCACCAGAAAAATACCAAAGGGCCCAGGAGCAAGAGAGGTTTGAGAAAATAGAAGACCATCACCGGTGAAATGTTTTAGTTTCAGTGTGGCAAACATAACCTTCATCCATGACCTTCTTGAGAACAAACACGGTGGTGACATGGCAcaattgtgattaaaaaaaattaaggaaacTGCATATGACTACATTTGATTCTAAGCAATGTATATTCTTAGTAAAGGtaatctggatttttttaaatttagtaatAAGTTCACAGAAGAGAAATTTATCTAAATCTGAATGACTTGAGCAGCTTTCTGATTGTAAGAACGTCACTAGTTTGTCCAATGTGACCGTATTCACATTAGTAACTACACATCCATAACCACAGTTGCACATTGTAAACCAATAAATCA
>XM_026913735.2
GGCATGTGTGCACTCATACTACAGAGTGTTTTACTAACTATGTAAAGCCCTAAAGTTAGTCATGTGATACAAGGACAGTTTATAAACCAGTTCAGATTGAATCAGGGGGTATTGTAACCTTTAAAGGATCCCCCAGACCTACAGAACACAAAGGCAGGTCTTAGTCCAAAAATGTCAGATACAGAAGAAGTTGCATATGAGGAGAATGAGGGTGTGACCACGGAACATGGAGAAGAAGAAGAGGCAAAACCAAAGCCAAAAGCTTTTCTGCCACCCATGGTCCCTCCCAAAATACCTGATGGGGAGAAAGTTGACTTTGATGATATCCACCGTAAGCGCATGGAGAAGGACCTGACAGAGCTCCAGTCCTTAATTGAGGCACACTTCGAGAGCCGcaaaaaagaagaggaggaatTAATCGCTCTGTCCAGTAGAATGgaaaaacgACGGACAGaaagagcagagcagcagagaATCCgtgcagaaaaagagagagagcgtcAGAACAAGCTGGCGGAAGAAAAGGCAcggaaagaggaggaagaggcaaAGAAAAAAGCTGAAGATGATGCCAAGAAAAAGAAGGTTCTGACAAGTTTACAGTTCAGCGGATACATGCAGAGGACAGACAAGCGGGGAGGACAGaggaaacaaacagagagagagaagaagagaaaaattcTTAGTGAGCGGCGTAAAGAGCTCAACGTTGAAGATCTGAATGCTGAGAAGCTCAGAGAGAAAGCCAACGAACTTTGGAAATGGATGTACCAACTTGAGGCAGAGAAATTTGAACtgcaatacaaatatatacatcaGAAATATGAGATCACCGTTCTGAGAAACAGGGTCAGCGACCACCAGAAAAATACCAAAGGGCCCAGGAGCAAGAGAGGTTTGAGAAAATAGAAGACCATCACCGGTGAAATGTTTTAGTTTCAGTGTGGCAAACATAACCTTCATCCATGACCTTCTTGAGAACAAACACGGTGGTGACATGGCAcaattgtgattaaaaaaaattaaggaaacTGCATATGACTACATTTGATTCTAAGCAATGTATATTCTTAGTAAAGGtaatctggatttttttaaatttagtaatAAGTTCACAGAAGAGAAATTTATCTAAATCTGAATGACTTGAGCAGCTTTCTGATTGTAAGAACGTCACTAGTTTGTCCAATGTGACCGTATTCACATTAGTAACTACACATCCATAACCACAGTTGCACATTGTAAACCAATAAATCATGATGAAAGTT
>XM_026913744.2
AGGCATGTGTGCACTCATACTACAGAGTGTTTTACTAACTATGTAAAGCCCTAAAGTTAGTCATGTGATACAAGGACAGTTTATAAACCAGTTCAGATTGAATCAGGGGGTATTGTAACCTTTAAAGGATCCCCCAGACCTACAGAACACAAAGGTCTTAGTCCAAAAATGTCAGATACAGAAGAAGTTGCATATGAGGAGAATGAGGGTGTGACCACGGAACATGGAGAAGAAGAAGAGGCAAAACCAAAGCCAAAAGCTTTTCTGCCACCCATGGTCCCTCCCAAAATACCTGATGGGGAGAAAGTTGACTTTGATGATATCCACCGTAAGCGCATGGAGAAGGACCTGACAGAGCTCCAGTCCTTAATTGAGGCACACTTCGAGAGCCGcaaaaaagaagaggaggaatTAATCGCTCTGTCCAGTAGAATGgaaaaacgACGGACAGaaagagcagagcagcagagaATCCgtgcagaaaaagagagagagcgtcAGAACAAGCTGGCGGAAGAAAAGGCAcggaaagaggaggaagaggcaaAGAAAAAAGCTGAAGATGATGCCAAGAAAAAGAAGGTTCTGACAAGTTTACAGTTCAGCGGATACATGCAGAGGACAGACAAGCGGGGAGGACAGaggaaacaaacagagagagagaagaagagaaaaattcTTAGTGAGCGGCGTAAAGAGCTCAACGTTGAAGATCTGAATGCTGAGAAGCTCAGAGAGAAAGCCAACGAACTTTGGAAATGGATGTACCAACTTGAGGCAGAGAAATTTGAACtgcaatacaaatatatacatcaGAAATATGAGATCACCGTTCTGAGAAACAGGGTCAGCGACCACCAGAAAAATACCAAAGGGCCCAGGAGCAAGAGAGGTTTGAGAAAATAGAAGACCATCACCGGTGAAATGTTTTAGTTTCAGTGTGGCAAACATAACCTTCATCCATGACCTTCTTGAGAACAAACACGGTGGTGACATGGCAcaattgtgattaaaaaaaattaaggaaacTGCATATGACTACATTTGATTCTAAGCAATGTATATTCTTAGTAAAGGtaatctggatttttttaaatttagtaatAAGTTCACAGAAGAGAAATTTATCTAAATCTGAATGACTTGAGCAGCTTTCTGATTGTAAGAACGTCACTAGTTTGTCCAATGTGACCGTATTCACATTAGTAACTACACATCCATAACCACAGTTGCACATTGTAAACCAATAAATCATGATGAAAGTT
>XM_026913751.2
ATGAGGCATGTGTGCACTCATACTACAGAGTGTTTTACTAACTATGTAAAGCCCTAAAGTTAGTCATGTGATACAAGGACAGTTTATAAACCAGTTCAGATTGAATCAGGGGGTATTGTAACCTTTAAAGGATCCCCCAGACCTACAGAACACAAAGGCAGGTCTTAGTCCAAAAATGTCAGATACAGAAGAAGTTGCATATGAGGAGAATGAGGGTGTGACCACGGAACATGGAGAAGAAGAGGCAAAACCAAAGCCAAAAGCTTTTCTGCCACCCATGGTCCCTCCCAAAATACCTGATGGGGAGAAAGTTGACTTTGATGATATCCACCGTAAGCGCATGGAGAAGGACCTGACAGAGCTCCAGTCCTTAATTGAGGCACACTTCGAGAGCCGcaaaaaagaagaggaggaatTAATCGCTCTGTCCAGTAGAATGgaaaaacgACGGACAGaaagagcagagcagcagagaATCCgtgcagaaaaagagagagagcgtcAGAACAAGCTGGCGGAAGAAAAGGCAcggaaagaggaggaagaggcaaAGAAAAAAGCTGAAGATGATGCCAAGAAAAAGAAGGTTCTGACAAGTTTACAGTTCAGCGGATACATGCAGAGGACAGACAAGCGGGGAGGACAGaggaaacaaacagagagagagaagaagagaaaaattcTTAGTGAGCGGCGTAAAGAGCTCAACGTTGAAGATCTGAATGCTGAGAAGCTCAGAGAGAAAGCCAACGAACTTTGGAAATGGATGTACCAACTTGAGGCAGAGAAATTTGAACtgcaatacaaatatatacatcaGAAATATGAGATCACCGTTCTGAGAAACAGGGTCAGCGACCACCAGAAAAATACCAAAGGGCCCAGGAGCAAGAGAGGTTTGAGAAAATAGAAGACCATCACCGGTGAAATGTTTTAGTTTCAGTGTGGCAAACATAACCTTCATCCATGACCTTCTTGAGAACAAACACGGTGGTGACATGGCAcaattgtgattaaaaaaaattaaggaaacTGCATATGACTACATTTGATTCTAAGCAATGTATATTCTTAGTAAAGGtaatctggatttttttaaatttagtaatAAGTTCACAGAAGAGAAATTTATCTAAATCTGAATGACTTGAGCAGCTTTCTGATTGTAAGAACGTCACTAGTTTGTCCAATGTGACCGTATTCACATTAGTAACTACACATCCATAACCACAGTTGCACATTGTAAACCAATAAATCATGATGAAAGTT
>XM_034312340.1
AATGAGGCATGTGTGCACTCATACTACAGAGTGTTTTACTAACTATGTAAAGCCCTAAAGTTAGTCATGTGATACAAGGACAGTTTATAAACCAGTTCAGATTGAATCAGGGGGTATTGTAACCTTTAAAGGATCCCCCAGACCTACAGAACACAAAGGTCTTAGTCCAAAAATGTCAGATACAGAAGAAGTTGCATATGAGGAGAATGAGGGTGTGACCACGGAACATGGAGAAGAAGAGGCAAAACCAAAGCCAAAAGCTTTTCTGCCACCCATGGTCCCTCCCAAAATACCTGATGGGGAGAAAGTTGACTTTGATGATATCCACCGTAAGCGCATGGAGAAGGACCTGACAGAGCTCCAGTCCTTAATTGAGGCACACTTCGAGAGCCGcaaaaaagaagaggaggaatTAATCGCTCTGTCCAGTAGAATGgaaaaacgACGGACAGaaagagcagagcagcagagaATCCgtgcagaaaaagagagagagcgtcAGAACAAGCTGGCGGAAGAAAAGGCAcggaaagaggaggaagaggcaaAGAAAAAAGCTGAAGATGATGCCAAGAAAAAGAAGGTTCTGACAAGTTTACAGTTCAGCGGATACATGCAGAGGACAGACAAGCGGGGAGGACAGaggaaacaaacagagagagagaagaagagaaaaattcTTAGTGAGCGGCGTAAAGAGCTCAACGTTGAAGATCTGAATGCTGAGAAGCTCAGAGAGAAAGCCAACGAACTTTGGAAATGGATGTACCAACTTGAGGCAGAGAAATTTGAACtgcaatacaaatatatacatcaGAAATATGAGATCACCGTTCTGAGAAACAGGGTCAGCGACCACCAGAAAAATACCAAAGGGCCCAGGAGCAAGAGAGGTTTGAGAAAATAGAAGACCATCACCGGTGAAATGTTTTAGTTTCAGTGTGGCAAACATAACCTTCATCCATGACCTTCTTGAGAACAAACACGGTGGTGACATGGCAcaattgtgattaaaaaaaattaaggaaacTGCATATGACTACATTTGATTCTAAGCAATGTATATTCTTAGTAAAGGtaatctggatttttttaaatttagtaatAAGTTCACAGAAGAGAAATTTATCTAAATCTGAATGACTTGAGCAGCTTTCTGATTGTAAGAACGTCACTAGTTTGTCCAATGTGACCGTATTCACATTAGTAACTACACATCCATAACCACAGTTGCACATTGTAAACCAATAAATCATGATGAAAGTT

Function

symbol description
tnnt2 Enables cytoskeletal protein binding activity and identical protein binding activity. Contributes to microfilament motor activity. Involved in several processes, including muscle filament sliding; regulation of ATPase activity; and ventricular cardiac muscle tissue morphogenesis. Located in cardiac myofibril and striated muscle thin filament. Part of cardiac Troponin complex. Implicated in intrinsic cardiomyopathy (multiple). Biomarker of COVID-19 and myocardial infarction.

NR:

description
troponin T, cardiac muscle isoforms-like isoform X3

GO: NA

KEGG:

id description
K12045 TNNT2; troponin T, cardiac muscle

RNA

RNA id representative length rna type GC content exon number start site end site
TU28828 False 1082 TUCP 0.41 6 9715527 9718970
XM_026913735.2 False 1268 mRNA 0.41 13 9715516 9726046
XM_026913744.2 False 1265 mRNA 0.41 13 9715516 9726047
XM_026913751.2 True 1269 mRNA 0.41 13 9715516 9726050
XM_034312340.1 False 1266 mRNA 0.41 13 9715516 9726051

Neighbor

gene id symbol gene type direction distance location
sys1 sys1,LOC107587582,LOC107744372,LOC106565403 coding downstream 128198 9583921 ~ 9587318 (-)
snrpc snrpc,LOC107587645,LOC107696417,LOC107666039 coding downstream 138528 9570763 ~ 9576988 (-)
ilrun c11h6orf106,cunh6orf106,zgc:101577,LOC107724532,LOC107595408,LOC107666165 coding downstream 178612 9519378 ~ 9536904 (-)
LOC113530144 LOC108271967,LOC108433664,LOC107595455,LOC107724522,LOC107744410,LOC107587644,LOC107666045,LOC107696418 coding downstream 205752 9500833 ~ 9509764 (-)
rps10 rps10,LOC107595410,LOC102793608 coding downstream 244160 9468540 ~ 9471356 (-)
tnni1b tnni1,LOC106582713,LOC106566026,LOC103040607 coding upstream 16980 9743031 ~ 9749764 (-)
csrp1b csrp1,LOC108441585,LOC104918388,LOC101487148 coding upstream 26570 9752621 ~ 9756596 (-)
LOC113530316 LOC108271764 coding upstream 216004 9942055 ~ 9954145 (-)
ube2c ube2c,LOC107744406 coding upstream 252822 9978873 ~ 9982851 (-)
LOC113534196 dnttip1 coding upstream 257014 9983065 ~ 9992886 (-)
G24268 NA non-coding downstream 39777 9675522 ~ 9675739 (-)
G24260 NA non-coding downstream 78997 9635854 ~ 9636519 (-)
LOC113532556 NA non-coding downstream 94557 9615587 ~ 9620959 (-)
LOC113532571 NA non-coding downstream 99933 9612380 ~ 9615583 (-)
LOC113532565 NA non-coding downstream 119031 9594496 ~ 9596485 (-)
G24572 NA non-coding upstream 212205 9938256 ~ 9939043 (-)
G24611 NA non-coding upstream 425766 10151817 ~ 10152165 (-)
G24617 NA non-coding upstream 434981 10161032 ~ 10161241 (-)
G24620 NA non-coding upstream 442160 10168211 ~ 10168469 (-)
G24623 NA non-coding upstream 444919 10170970 ~ 10171175 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 273671 9435506 ~ 9441845 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 1231335 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 1363822 8343624 ~ 8351694 (-)
mitfa mitf,LOC108424034 other downstream 1450287 8260485 ~ 8265229 (-)
G22591 NA other downstream 3235505 6479402 ~ 6480011 (-)
G24516 NA other upstream 137316 9863367 ~ 9868278 (-)
G24760 NA other upstream 763242 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 1189991 10916042 ~ 10934164 (-)
kif5ab kif5a other upstream 1716420 11442471 ~ 11485469 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 1960694 11686745 ~ 11764135 (-)

Expression


Co-expression Network