G24617


Basic Information

Item Value
gene id G24617
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10161032 ~ 10161241 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU29190
ATTTTATTAGGAATGTCcactataaatactataaatgaTGCAATTTGTAGGTGTACAATTAATGACTGTGTTGCTATGTAAAAGCGTCTCTGTACCTCATCATTCAGTGAAATAAAACCACCATATAACCATAGCTGATCAGTTATTATTTGGTTTATAGATTGTTTCTTAAGccagcagtgctgctgaagtgttTACGCATACCATTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29190 True 210 lncRNA 0.33 1 10161032 10161241

Neighbor

gene id symbol gene type direction distance location
ctsa ctsa,LOC107587598,LOC107696438,LOC107744356,LOC107666023,LOC107560512 coding downstream 127582 10025424 ~ 10033450 (-)
pcif1 pcif1,LOC107666074,LOC107696439 coding downstream 154939 9994349 ~ 10006093 (-)
LOC113534196 dnttip1 coding downstream 168146 9983065 ~ 9992886 (-)
ube2c ube2c,LOC107744406 coding downstream 178181 9978873 ~ 9982851 (-)
LOC113530316 LOC108271764 coding downstream 206887 9942055 ~ 9954145 (-)
LOC113532087 LOC108271496 coding upstream 52667 10213908 ~ 10219381 (-)
eya2 eya2,LOC107666141,LOC106565282 coding upstream 80013 10241254 ~ 10259219 (-)
gcnt7 LOC108272018,LOC108272017 coding upstream 174152 10335393 ~ 10339327 (-)
LOC113532783 cdh22,LOC107553911,LOC107666158,LOC107587604,LOC107681302 coding upstream 391670 10552911 ~ 10743445 (-)
znfx1 znfx1 coding upstream 713683 10874924 ~ 10885023 (-)
G24611 NA non-coding downstream 8867 10151817 ~ 10152165 (-)
G24572 NA non-coding downstream 221989 9938256 ~ 9939043 (-)
G24268 NA non-coding downstream 485293 9675522 ~ 9675739 (-)
G24260 NA non-coding downstream 524513 9635854 ~ 9636519 (-)
LOC113532556 NA non-coding downstream 540073 9615587 ~ 9620959 (-)
G24620 NA non-coding upstream 6970 10168211 ~ 10168469 (-)
G24623 NA non-coding upstream 9729 10170970 ~ 10171175 (-)
LOC113534445 NA non-coding upstream 805455 10966696 ~ 10984007 (-)
G25184 NA non-coding upstream 860282 11021523 ~ 11021725 (-)
G25185 NA non-coding upstream 861198 11022439 ~ 11022641 (-)
G24516 NA other downstream 292754 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 434981 9715516 ~ 9726051 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 719187 9435506 ~ 9441845 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 1676851 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 1809338 8343624 ~ 8351694 (-)
G24760 NA other upstream 328052 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 754801 10916042 ~ 10934164 (-)
kif5ab kif5a other upstream 1281230 11442471 ~ 11485469 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 1525504 11686745 ~ 11764135 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 3332271 13493512 ~ 13502170 (-)

Expression


Co-expression Network