G25185


Basic Information

Item Value
gene id G25185
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11022439 ~ 11022641 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU29801
CAAGCAGGTTTTATCTCATCACAtcctgatttgtttttcttttctttcactgcTTTTACTCTAcactcagttcagttcagaCTTTTCTCTTGAGAAATCATTAGGAATTCAACACTACTTCAAAATATTGTAGAGTTCTAATCTTATAACAATAAAACACCGATGACTCTCATGTACCTGCATCACGCGCAGCTCTTTCAGAC

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function

KEGG:

id description
ko04724 Glutamatergic synapse
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU29801 True 203 lncRNA 0.38 1 11022439 11022641

Neighbor

gene id symbol gene type direction distance location
cbfa2t2 cbfa2t2,LOC107681292,LOC107740270,LOC107666150 coding downstream 10627 10986308 ~ 11011812 (-)
snrpb snrpb,LOC108272150 coding downstream 111955 10906195 ~ 10910484 (-)
ddx27 ddx27,LOC107553908,LOC107587605,LOC107681294 coding downstream 118494 10888412 ~ 10903945 (-)
znfx1 znfx1 coding downstream 137416 10874924 ~ 10885023 (-)
LOC113532783 cdh22,LOC107553911,LOC107666158,LOC107587604,LOC107681302 coding downstream 278994 10552911 ~ 10743445 (-)
tox2 tox2,LOC107681298,LOC107666148,LOC106565275 coding upstream 47244 11069885 ~ 11169050 (-)
soat2 LOC108272126,LOC108431801,LOC107734612,LOC107681296 coding upstream 406165 11428806 ~ 11441393 (-)
mbd6 mbd6 coding upstream 477947 11500588 ~ 11514630 (-)
mars1 mars coding upstream 499480 11522121 ~ 11536038 (-)
LOC113531982 LOC108272195 coding upstream 564263 11586904 ~ 11612295 (-)
G25184 NA non-coding downstream 714 11021523 ~ 11021725 (-)
LOC113534445 NA non-coding downstream 38432 10966696 ~ 10984007 (-)
G24623 NA non-coding downstream 851264 10170970 ~ 10171175 (-)
G24620 NA non-coding downstream 853970 10168211 ~ 10168469 (-)
G24617 NA non-coding downstream 861198 10161032 ~ 10161241 (-)
LOC117599085 NA non-coding upstream 235123 11257764 ~ 11262304 (-)
G25320 NA non-coding upstream 304185 11326826 ~ 11329556 (-)
G25476 NA non-coding upstream 435333 11457974 ~ 11458190 (-)
G25484 NA non-coding upstream 476604 11499245 ~ 11500508 (-)
G25478 ddit3 non-coding upstream 494847 11517488 ~ 11534525 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 88275 10916042 ~ 10934164 (-)
G24760 NA other downstream 532144 10489293 ~ 10490295 (-)
G24516 NA other downstream 1154161 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 1296388 9715516 ~ 9726051 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 1580594 9435506 ~ 9441845 (-)
kif5ab kif5a other upstream 419830 11442471 ~ 11485469 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 664104 11686745 ~ 11764135 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 2470871 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 2609621 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 2617740 13640381 ~ 13647177 (-)

Expression


Co-expression Network