kif5ab (kif5a)


Basic Information

Item Value
gene id kif5ab
gene name kif5a
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11442471 ~ 11485469 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU30126
ATACTGCACACCTGCCTCCTCCGCTTGCGCATGGAGTAGGCACAAGAGCAAAACTGTCAGGACATCCCAACATCCTAAAACATTTCCGTCATCTTATGAGAAACAAAATCAGTTTGGCTTATAGGTCTTCTGGCTGCAGAATCTTTTCGGCTTTGCGTAGAGACGCATTCTCTGTTTTGGATACTGCACGGCTCAGGGGAAGGTGCGAAACTGCGCATCTGTCATTCAGCCAACTCAAAGGGTTCCTGAGTGTTTCGACTATTTAATCCCAGCAGTCTACTAACCTGCTTTAAGAGCAGTATCTGCGATCTGTTTTACGCGCCTGGTAACGCACGGGAACCGTCACAAGAAAGCGATCGGCTTTAAAACACTTTCCACATCACACAATGGCTGAAGCCGGCGCAGAATGCAACATCAGGGTGCTGTGCCGTTTTCGCCCTTTGAACCAGTATGAAATCCTTCGTGGAGACAAATTTCTCCCCGTATTTCAGGGGGATGACAGTGTCATCATGGGGG
>XM_026922188.2
TCCTGATGCGAGCATCACTTCATTGTCACAGCATCAGAACACAAGCCACGCCCCCTTGCTATTCTCAAGCTGTGCCGAGCACGCAGCATCATACTGCACACCTGCCTCCTCCGCTTGCGCATGGAGTAGGCACAAGAGCAAAACTGTCAGGACATCCCAACATCCTAAAACATTTCCGTCATCTTATGAGAAACAAAATCAGTTTGGCTTATAGGTCTTCTGGCTGCAGAATCTTTTCGGCTTTGCGTAGAGACGCATTCTCTGTTTTGGATACTGCACGGCTCAGGGGAAGGTGCGAAACTGCGCATCTGTCATTCAGCCAACTCAAAGGGTTCCTGAGTGTTTCGACTATTTAATCCCAGCAGTCTACTAACCTGCTTTAAGAGCAGTATCTGCGATCTGTTTTACGCGCCTGGTAACGCACGGGAACCGTCACAAGAAAGCGATCGGCTTTAAAACACTTTCCACATCACACAATGGCTGAAGCCGGCGCAGAATGCAACATCAGGGTGCTGTGCCGTTTTCGCCCTTTGAACCAGTATGAAATCCTTCGTGGAGACAAATTTCTCCCCGTATTTCAGGGGGATGACAGTGTCATCATGGGGGGGAAGTCTTTCGTATTTGACCGAGTCTTTCCCACCAATACCACCCAAGAGCAGGTCTACAACAGCTGTGCCAAACAAATTGTTAaagATGTGCTGGATGGATACAATGGTACCATCTTTGCATACGGACAAACATCCTCTGGCAAAACCCACACCATGGAGGGAAAGCTCCATGATCCCGACAACATGGGCATTATTCCGAGGATCACTGATGACATCTTCAACTATATCTTTGCCATGGATGAAAACTTGGAATTTCACATCAAGGTTTCCTATTTTGAAATCTACATGGATAAAATTCGGGACCTGCTTGatgTGAGTAAGACCAACCTGTCAGTACATGAAGACAAGAACAGGGTCCCATATGTCAAGggtTGTACAGAACGCTTTGTCTCCAGTCCTGAGGAAGTGATGGATGTAATTGATGAAGGGAAATCTAACCGCCATGTAGCTGTTACCAATATGAATGAACACAGCTCCAGAAGTCATAGCATCTTCCTCATAAATATCAAACAAGAGCATGTGGAGACAGAGCAGAAACTCTCTGGCAAGCTCTACCTGGTGGACTTAGCTGGAAGTGAAAAGgTGAGCAAGACAGGTGCAGAAGGGTCTGTCCTGGATGAGGCcaaaaatatcaacaaatctcTTTCTGCACTGGGCAATGTGATATCAGCTCTGGCTGAGGGAACGAAGACCCACGTACCTTACCGAGACAGTAAGATGACCCGAATTCTCCAGGACTCATTAGGTGGAAACTGCAGAACCACCATGTTTATCTGCTGTTCACCTTCCTCTTACAATGAAGCTGAGACCAAATCTACACTCATGTTTGGACAACGTGCTAAAACCATAAGGAACTCAGCATCAGTGAATCTGGAGCTGACGGCAGATCAGTACAGGAGGAAGTacgagaaggagaaggaaaagaacAAGAGTCTGAAGGAAAGCATCCTGAGACTGGAGGCTGAACTTAAGCGCTGGCGTAATGgAGAGGCGGTCCCTGAGGTGGAGCAGGACGGTGTTTGTGTTGTGGAGTCTGAGCTTAGTGAAGATGCTGCTTTAGATGACCGAAGCAGTGGTCCATCCTCAGTTCCCCTCACAGTTACAGAGGAGGAGCTATGCAAACTTTACAAACAGCTAGATGACAAGGATGATGAGATTAACTTGCAGAGTCAACTGGTGGAAAAACTGAAGGAGCAGATGCTGGATCAGGAGGAGgTTTTGGCATCATCACGAGCGGACAGCGAGCGGGTCCAGTGTGAGCTGGGCCACCTTCAGGCTGAGAGTGAGAGTGCTAAAGCAGAAGTTAAGGAGGTTTTGCAGGCTTTGGAGGAACTGGCACTTAGCTATGACCAGAAGAGTCATGAGGCCCAAAACAAGAGTATGGAGAACAAACTGCTCACTCAAGAGCTTGCCCAGAAAATGACAGATTTGATGTGCTTGGAGACTGAATTCTCGcagctgcaggaagtgaacaaTCAGCAGAGGAAACGCATCACTGAGGTTCTAAATACCCTGCTGAAGGATTTGAGTGACTTCAGCATCATCTTGGGCAGTGGTGAAATCAGACTGCCACACGATCTCTCTGGTGTGTTAGAGGGAGAGTATGCTGTGGTGTGCGTTTACATTAGTAAGGTAAAGTCAGAGCTGAAGTCCCTAGTAAACCGCTGCAGGCAGCTAGAGAACTTGCAGACAGACAGCCAACGCAAAATGGAGGAGACTGGGAGAGAACTGTCGTCTTGCCAACTGCTCATATCACAGCATGAGGCAAAAATCCGCTCTCTGACTGAGTACATGCAGAATATGGAGCTGAAGAAGAGGCAGTTGGAGGAGAACTGCGACTGTCTTGTGACTGAGATAGCAAGATTACAGAATGCAGAGAGCCTTCAAGAAAACCAGCAAGACAGTGAGGAGGCTGGGGAACCTAAGCACCGAGGCAATCATCTTGAATCGCAGCACAAACAACTTGGCCGCCTGCGCGATGACATCAACAACAAGCAGAAGATAATCGATGAGCTCACAGATGAAAATCAGAGGCTGGTTGTGGAATTACAACAATTGCGTGCTGAGTTTGTTAGCTTGAAAAGTCAAGACTGTGAGAAGAGTGCCCGGTTGGAAGAGCTCAAATATCTCAATGAACGCCATGAGCAGGCTAAACAAGACATGAAAAGGCTGGAAGAAACTGTTGCTTGTGAGCTCCAGAGCTTGCACAACCTGAGGAAGCTTTTTGTTCAAGACCTCACAACTCGAGTTAAACGAAGCTCTGAAATGGAACTCGATGATAGTGGAGGGTTTTCCACCCAGAAGCAGAAGATTTCCTTTCTTGAGAACAACTTGGAACAGCTTACAAAAGTACACAAACAGctgGTGCGTGATAACGCAGATCTGCGCTGTGAACTTCCTAAACTGGAGAAGCGTCTTCGTTCTACGGCTGAGCGAGTTCGCGCACTGGAGGGTGCACTGAAAGAAGCCAAAGAAGGAGCCATGAAAGACCGGCGCCGCTACCAGCACGAAGTTGAGCGTATTAGAGAGGTCATGAGAACCAAGAACTTCTTTCATCGCCCTAATACTGCATTGATTGCCAAACCTGTTCGACCGGGGCACTACCCTGCATACTCACCAATCAATCACACATTCGTGCGCACCAATGATCCAAGAATTGCATTTAGCAATGTATTGTTTCAGAGAGCCATTCAACCCCGCATAAAGAATAAATCAAACTATATGGACAAAGTTCCTGAGGACAGACACAGCACAGCAAATGAGTCGCTAAACTGCACTCACAAGCTTAACACTGTCAATGGGAATACCACAGACATCAATGACAACAGCGTGCCTCTCAGTGACTGTTCAGTGTGTAGCAATGATGAGCACTGCAGGGCTCCTCCTGACCAGATCAAACAGCAACAACCGGTTATCCAACAGGAGCAAGCAACCAGCTAGTCACTTAGAAAATGTGCCAAACGAGGTACACAAAACATACCAGAAGCACAGAGTATACAGATATAATTGAAATAACTCTCCTAACTTAGTGGTATTCAGTAGATAATATTCCATCTAATACTGAATCTTGTTCTAACATTTAGATATGTTATAATTTATTGCTATAAGAGCATTAAGAACATCAATGCTTGTCTCTGTCATAGATAACATGTTGTAAGTCCTTTTCTGTATATGTGCATGTTGCCTGCGAAAGGACCTTCACAGAAAAGGCCTCTGCATTTCTCTGTTCTGTATACGCAATATATAGCTTTTAAAGTCAACCAGCAGATggtgctgttttgtgttttgaagATCAGCATTTGCTATATATAGTACACACAAATACTGTATGAGAATCTTGAGATGATGTGAGATGGCAGTGTAATCAAGTtagttgtgtgtatttatgtatgatGATATATTGGGATATATCATGTTATATTGGGATGAATAGTCACAAACATAGGCACCATATGTATTGTAGATCAGGCTGTAGTTGCTTAACTATCGACTATTAAATGAAGatctctcattcactcactgaaCAGGCATTACTCAACATGGGCCTTATGTGTACCTCTCTGTGTGCTTGTAGCTGTGGCTCTCTCCTAATCAGCCAGTTAggatgagaaaataaagaaggTCAGAAATACTACCTGTACATCCTGATAATAAAGATGGAATTAAGTGCATAAACCTCAGAGCTAATACAAATGGATATTTGTTTTGCTAAGTTACTCTGGTACAAAGTGTTTCACTAAGCTCTGAAAAGTCTATTCAGTGACCTTCATCTGAACCCATCTGATTCATAAACAAGAAATTTGATTGTGCTTTTTGAAACATGAAATTGTTTTTTGACAGAGATTAACTGAAGTGTTGGATTTGGGGGGTGGGGACTACTAATGTAGTCCAGGCCTAGGGTGTGCATGCATATAAATTACACATATTTTGCTAACTTAGCCTAATATACAATAGTTGGGCAATATTTCCTAATGTAATGCAGTGgagatttgtaaaaaaaaataaataatttggaaTCAGGCAGTTGTTTGCAGTTACTATATTTTTTATggctttgtttttgtattttcttgtgACTAAAATATAGTGCACGCTGCGCAACATGCATCTGTAGCAGATAAGATGGCCTTACTCAGGAAAATGTGTCAATAAAAAATACATCTCTAAATGTTA

Function

symbol description
kif5a Predicted to enable microtubule binding activity and plus-end-directed microtubule motor activity. Predicted to be involved in several processes, including axo-dendritic transport; axon guidance; and synaptic vesicle transport. Located in membrane. Implicated in amyotrophic lateral sclerosis; hereditary spastic paraplegia 10; multiple sclerosis; prostate cancer; and rheumatoid arthritis. Biomarker of asbestos-related lung carcinoma.

NR:

description
kinesin heavy chain isoform X1

GO: NA

KEGG:

id description
K10396 KIF5; kinesin family member 5

RNA

RNA id representative length rna type GC content exon number start site end site
TU30126 False 516 lncRNA 0.51 1 11484864 11485379
XM_026922188.2 True 4781 mRNA 0.44 28 11442471 11485469

Neighbor

gene id symbol gene type direction distance location
soat2 LOC108272126,LOC108431801,LOC107734612,LOC107681296 coding downstream 1078 11428806 ~ 11441393 (-)
tox2 tox2,LOC107681298,LOC107666148,LOC106565275 coding downstream 273421 11069885 ~ 11169050 (-)
cbfa2t2 cbfa2t2,LOC107681292,LOC107740270,LOC107666150 coding downstream 430659 10986308 ~ 11011812 (-)
snrpb snrpb,LOC108272150 coding downstream 531987 10906195 ~ 10910484 (-)
ddx27 ddx27,LOC107553908,LOC107587605,LOC107681294 coding downstream 538526 10888412 ~ 10903945 (-)
mbd6 mbd6 coding upstream 15119 11500588 ~ 11514630 (-)
mars1 mars coding upstream 36652 11522121 ~ 11536038 (-)
LOC113531982 LOC108272195 coding upstream 101435 11586904 ~ 11612295 (-)
gli1 gli1 coding upstream 133502 11618971 ~ 11660989 (-)
rbm19 rbm19,LOC100304870,LOC107666967 coding upstream 497493 11982962 ~ 11994574 (-)
G25320 NA non-coding downstream 112915 11326826 ~ 11329556 (-)
LOC117599085 NA non-coding downstream 180167 11257764 ~ 11262304 (-)
G25185 NA non-coding downstream 419830 11022439 ~ 11022641 (-)
G25184 NA non-coding downstream 420746 11021523 ~ 11021725 (-)
LOC113534445 NA non-coding downstream 458464 10966696 ~ 10984007 (-)
G25484 NA non-coding upstream 13776 11499245 ~ 11500508 (-)
G25478 ddit3 non-coding upstream 32019 11517488 ~ 11534525 (-)
G25553 NA non-coding upstream 211610 11697079 ~ 11698078 (-)
G25570 NA non-coding upstream 252098 11737567 ~ 11738741 (-)
G25575 r3hdm2 non-coding upstream 267018 11752487 ~ 11772290 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 508307 10916042 ~ 10934164 (-)
G24760 NA other downstream 952176 10489293 ~ 10490295 (-)
G24516 NA other downstream 1574193 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 1716420 9715516 ~ 9726051 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 2000626 9435506 ~ 9441845 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 201276 11686745 ~ 11764135 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 2008043 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 2146793 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 2154912 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 2379475 13864944 ~ 13907189 (-)

Expression


Co-expression Network