G25476


Basic Information

Item Value
gene id G25476
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11457974 ~ 11458190 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU30130
CATTACTACACTTACACTTCTGGGCAagaaatgggccaagcccaaaatggcaaatattaagcttttaatggtcttaacaacaaatcattggtcagaataTTAGCAtaaaatgcactcctgagacctcctgtgccaACATTAgcttgtttacttttgctgctgCGCTGCAGTTTATGCGGAAGAGCTGGAAACAGGGAAATttacttatatagtcttc

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG:

id description
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU30130 True 217 lncRNA 0.40 1 11457974 11458190

Neighbor

gene id symbol gene type direction distance location
soat2 LOC108272126,LOC108431801,LOC107734612,LOC107681296 coding downstream 16581 11428806 ~ 11441393 (-)
tox2 tox2,LOC107681298,LOC107666148,LOC106565275 coding downstream 288924 11069885 ~ 11169050 (-)
cbfa2t2 cbfa2t2,LOC107681292,LOC107740270,LOC107666150 coding downstream 446162 10986308 ~ 11011812 (-)
snrpb snrpb,LOC108272150 coding downstream 547490 10906195 ~ 10910484 (-)
ddx27 ddx27,LOC107553908,LOC107587605,LOC107681294 coding downstream 554029 10888412 ~ 10903945 (-)
mbd6 mbd6 coding upstream 42398 11500588 ~ 11514630 (-)
mars1 mars coding upstream 63931 11522121 ~ 11536038 (-)
LOC113531982 LOC108272195 coding upstream 128714 11586904 ~ 11612295 (-)
gli1 gli1 coding upstream 160781 11618971 ~ 11660989 (-)
rbm19 rbm19,LOC100304870,LOC107666967 coding upstream 524772 11982962 ~ 11994574 (-)
G25320 NA non-coding downstream 128418 11326826 ~ 11329556 (-)
LOC117599085 NA non-coding downstream 195670 11257764 ~ 11262304 (-)
G25185 NA non-coding downstream 435333 11022439 ~ 11022641 (-)
G25184 NA non-coding downstream 436249 11021523 ~ 11021725 (-)
LOC113534445 NA non-coding downstream 473967 10966696 ~ 10984007 (-)
G25484 NA non-coding upstream 41055 11499245 ~ 11500508 (-)
G25478 ddit3 non-coding upstream 59298 11517488 ~ 11534525 (-)
G25553 NA non-coding upstream 238889 11697079 ~ 11698078 (-)
G25570 NA non-coding upstream 279377 11737567 ~ 11738741 (-)
G25575 r3hdm2 non-coding upstream 294297 11752487 ~ 11772290 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 523810 10916042 ~ 10934164 (-)
G24760 NA other downstream 967679 10489293 ~ 10490295 (-)
G24516 NA other downstream 1589696 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 1731923 9715516 ~ 9726051 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 2016129 9435506 ~ 9441845 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 228555 11686745 ~ 11764135 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 2035322 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 2174072 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 2182191 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 2406754 13864944 ~ 13907189 (-)

Expression


Co-expression Network