G25553


Basic Information

Item Value
gene id G25553
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11697079 ~ 11698078 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU30209
ACAACTTGTGCTTCAGAAGAAGAACTATATTCAACGATGTATATTATCATCATCAAGCGTATCGCACGCCACATTCAACCACAGCAGAAACGGTCTTTCAGAGTCTCTACTGGTGGACAAATTCCTTCCGGCTTctcatttccaccactgtaCCTCTCACTGCTGCCAAGCATTGTAAAACAATACTTTCACAACACCTTACAATTGCTGTTATCTCACTGTCATATAAACGAGCACAGAGACACGTTTTTACAGCTGGGTAATCAAATAAGCCTTGTGACGTTGTAAGCCTCATGGTGACGTCGAGGCACTTAAATCTAAAGTTCACTCAAAACTTTCTTGAGATATACCTGTCAGTTGTGGTGGACTGCGGTCTGGAAACAGAGCAAACCGAGtacatggggggaaaaaaCTCCCAGttccagtcccaagcctggaaaAAACTGGTGAGGGCttcatcaggaagggcatccggcattcaaaactgtgccaaatcaaacatgtggaccaataatccactgtggcaacccctaacgagagcagccgaaagaacaacatttAGCTGAAGGCAACTCATCGAatcagagactagctacagggggGAGAGACATTAGTTCAGAAAGCAATGGAGTTtcatattttcagatttttctttcttttcttttttttttatttaccccCTGTGATCTGATTAATGAAATACTGACattgtttaaagaaaagtcTCTTAAAACTTTTAGCTTTAGTCCAATTCATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30209 True 758 lncRNA 0.38 2 11697079 11698078

Neighbor

gene id symbol gene type direction distance location
gli1 gli1 coding downstream 36090 11618971 ~ 11660989 (-)
LOC113531982 LOC108272195 coding downstream 84784 11586904 ~ 11612295 (-)
mars1 mars coding downstream 161041 11522121 ~ 11536038 (-)
mbd6 mbd6 coding downstream 182449 11500588 ~ 11514630 (-)
soat2 LOC108272126,LOC108431801,LOC107734612,LOC107681296 coding downstream 255686 11428806 ~ 11441393 (-)
rbm19 rbm19,LOC100304870,LOC107666967 coding upstream 284884 11982962 ~ 11994574 (-)
epha2a LOC108271798,LOC108427555 coding upstream 298885 11996963 ~ 12008819 (-)
LOC117596078 NA coding upstream 328650 12026728 ~ 12028660 (-)
tardbp LOC108271795,LOC108427558,LOC107555974,LOC107713527 coding upstream 337554 12035632 ~ 12041298 (-)
ca16b LOC108272134 coding upstream 345551 12043629 ~ 12125659 (-)
G25478 ddit3 non-coding downstream 162554 11517488 ~ 11534525 (-)
G25484 NA non-coding downstream 196571 11499245 ~ 11500508 (-)
G25476 NA non-coding downstream 238889 11457974 ~ 11458190 (-)
G25320 NA non-coding downstream 367523 11326826 ~ 11329556 (-)
LOC117599085 NA non-coding downstream 434775 11257764 ~ 11262304 (-)
G25570 NA non-coding upstream 39489 11737567 ~ 11738741 (-)
G25575 r3hdm2 non-coding upstream 54409 11752487 ~ 11772290 (-)
G25723 NA non-coding upstream 239537 11937615 ~ 11937803 (-)
LOC117596184 NA non-coding upstream 514910 12212988 ~ 12214802 (-)
G26077 NA non-coding upstream 566614 12264692 ~ 12269812 (-)
kif5ab kif5a other downstream 211610 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 762915 10916042 ~ 10934164 (-)
G24760 NA other downstream 1206784 10489293 ~ 10490295 (-)
G24516 NA other downstream 1828801 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 1971028 9715516 ~ 9726051 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 1795434 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 1934184 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 1942303 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 2166866 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 2352323 14050401 ~ 14058445 (-)

Expression


Co-expression Network