G25723


Basic Information

Item Value
gene id G25723
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11937615 ~ 11937803 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU30403
aacacacactcaactttTCTTAATGTTTGCCATTCTCCTTACATTCTGTCAGCTGTCTATATAATATCTACTCAGGAGGAAAACTCCAGGTACTTTGGTGCCTCAAGCTGTAAccgagaggggggaaaaaaccctaAATGAAGCACCAGcatccagccaatcaggatGAGGATGTGTTCCTATTCGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30403 True 189 lncRNA 0.43 1 11937615 11937803

Neighbor

gene id symbol gene type direction distance location
gli1 gli1 coding downstream 276626 11618971 ~ 11660989 (-)
LOC113531982 LOC108272195 coding downstream 325320 11586904 ~ 11612295 (-)
mars1 mars coding downstream 401577 11522121 ~ 11536038 (-)
mbd6 mbd6 coding downstream 422985 11500588 ~ 11514630 (-)
soat2 LOC108272126,LOC108431801,LOC107734612,LOC107681296 coding downstream 496222 11428806 ~ 11441393 (-)
rbm19 rbm19,LOC100304870,LOC107666967 coding upstream 45159 11982962 ~ 11994574 (-)
epha2a LOC108271798,LOC108427555 coding upstream 59160 11996963 ~ 12008819 (-)
LOC117596078 NA coding upstream 88925 12026728 ~ 12028660 (-)
tardbp LOC108271795,LOC108427558,LOC107555974,LOC107713527 coding upstream 97829 12035632 ~ 12041298 (-)
ca16b LOC108272134 coding upstream 105826 12043629 ~ 12125659 (-)
G25575 r3hdm2 non-coding downstream 165325 11752487 ~ 11772290 (-)
G25570 NA non-coding downstream 198874 11737567 ~ 11738741 (-)
G25553 NA non-coding downstream 239537 11697079 ~ 11698078 (-)
G25478 ddit3 non-coding downstream 403090 11517488 ~ 11534525 (-)
G25484 NA non-coding downstream 437107 11499245 ~ 11500508 (-)
LOC117596184 NA non-coding upstream 275185 12212988 ~ 12214802 (-)
G26077 NA non-coding upstream 326889 12264692 ~ 12269812 (-)
G26082 NA non-coding upstream 332071 12269874 ~ 12270255 (-)
G26085 NA non-coding upstream 337432 12275235 ~ 12276054 (-)
G26117 NA non-coding upstream 537344 12475147 ~ 12485954 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 173480 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 452146 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 1003451 10916042 ~ 10934164 (-)
G24760 NA other downstream 1447320 10489293 ~ 10490295 (-)
G24516 NA other downstream 2069337 9863367 ~ 9868278 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 1555709 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 1694459 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 1702578 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 1927141 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 2112598 14050401 ~ 14058445 (-)

Expression


Co-expression Network