LOC117596184


Basic Information

Item Value
gene id LOC117596184
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12212988 ~ 12214802 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU30538
AATTAACATACAGGGTTAGCTACCCAGCTGGGGGTCCATACTGCCATAAAATACACTgtgtctcttctcttctattCTATTGTATTGGTACTCTGGTCATGATACATTTCAAAAAGGCTCAGGAGTATAAGAAGGTATGCACTGTACAATGTAGAGAAGCTTTACCATCAGAGAGATGCTTTACCATCACGCATCCTCTGTCCATGACTCTGTCCATCAGTGTTGGGTTCCCTTCTGCAGTTGCTGTGAGGAAGATGCGGCAcaggaaacaaaacacactccaAGGAGAACAGAGGCCAAGAACAGCTACTGAATCATGACTGTGCTTTCATGCCAGTGGGGAAGAAATAGAGGGCAGAACTAGAGCTGTGCAGGT
>XR_004577361.1
GGGTCCATACTGCCATAAAATACACTgtgtctcttctcttctattCTATTGTATTGGTACTCTGGTCATGATACATTTCAAAAAGGCTCAGGAGTATAAGAAGGTATGCACTGTACAATGTAGAGAAGCTTTACCATCAGAGAGATGCTTTACCATCACGCATCCTCTGTCCATGACTCTGTCCATCAGTGTTGGGTTCCCTTCTGCAGTTGCTGTGAGGAAGATGCGGCAcaggaaacaaaacacactccaAGGAGAACAGAGGCCAAGAACAGCTACTGAATCATGACTGTGCTTTCATGCCAGTGGGGAAGAAATAGAGGGCAGAACTAGAGCTGTGCAGGTGGCTGGTGCAGCAGGCTCATTTAGTGCTGATCAAACCTTTCTGGGAAAGCAGCCACCAAGCTCCCCCATCTCTGGCCAATCTCCATATGCATTCGTCTGCTTATCATTCACGATGAGCTGCATGTTTAAAGGAAGACTTCAGACTTTTTGGGACAaacttttaaacacacattactTGCCATCTGTGAAACATTTGTTACAAATCTTAAGAAACAACATGTTTTAATCAGTAAATTATAACCAGTCCAATAATTAATTTGCCCAGCGTGTTGCAACTATGCTTTCTAGACTGGCAACACCTTTGGGCAGTGCACACAGGCAATTTTAACAGCAtgcacagtaatctcatgtgaCTTTTGTTAATATCTCATTCCCATTTCTGCTGCAAGCAAAACATTGCATGGCCTCAAAACGTCGCCAGTGTATTCACTTACATTATGAGTGTAATATTACTGTAGAACATTACTGAGTTACAAAATGCCTCAAACATTTGATCTTTTGAAGCTCA

Function

GO: NA

KEGG:

id description
ko05110 Vibrio cholerae infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU30538 False 376 lncRNA 0.45 2 12213764 12214802
XR_004577361.1 True 853 lncRNA 0.42 3 12212988 12214771

Neighbor

gene id symbol gene type direction distance location
ca16b LOC108272134 coding downstream 87329 12043629 ~ 12125659 (-)
tardbp LOC108271795,LOC108427558,LOC107555974,LOC107713527 coding downstream 171690 12035632 ~ 12041298 (-)
LOC117596078 NA coding downstream 184328 12026728 ~ 12028660 (-)
epha2a LOC108271798,LOC108427555 coding downstream 204169 11996963 ~ 12008819 (-)
rbm19 rbm19,LOC100304870,LOC107666967 coding downstream 218414 11982962 ~ 11994574 (-)
camk1a camk1a,LOC108271991,LOC108427562,LOC107708108,LOC107680695,LOC107713533,LOC107667041 coding upstream 8442 12223244 ~ 12244251 (-)
kcnb1 kcnb1,LOC108272148,LOC107667042,LOC107713536,LOC107680683,LOC107555957 coding upstream 61816 12276618 ~ 12303048 (-)
ptgis ptgis coding upstream 90647 12305449 ~ 12356720 (-)
tarbp2 tarbp2,LOC107713493,LOC107666976,LOC107708175,LOC107561017,LOC107680718 coding upstream 217408 12432210 ~ 12438065 (-)
zgc:66479 NA coding upstream 224861 12439663 ~ 12443661 (-)
G25723 NA non-coding downstream 275185 11937615 ~ 11937803 (-)
G25575 r3hdm2 non-coding downstream 440698 11752487 ~ 11772290 (-)
G25570 NA non-coding downstream 474247 11737567 ~ 11738741 (-)
G25553 NA non-coding downstream 514910 11697079 ~ 11698078 (-)
G25478 ddit3 non-coding downstream 678463 11517488 ~ 11534525 (-)
G26077 NA non-coding upstream 49890 12264692 ~ 12269812 (-)
G26082 NA non-coding upstream 55072 12269874 ~ 12270255 (-)
G26085 NA non-coding upstream 60433 12275235 ~ 12276054 (-)
G26117 NA non-coding upstream 260345 12475147 ~ 12485954 (-)
G26124 NA non-coding upstream 286896 12501698 ~ 12502087 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 448853 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 727519 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 1278824 10916042 ~ 10934164 (-)
G24760 NA other downstream 1722693 10489293 ~ 10490295 (-)
G24516 NA other downstream 2344710 9863367 ~ 9868278 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 1278710 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 1417460 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 1425579 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 1650142 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 1835599 14050401 ~ 14058445 (-)

Expression


Co-expression Network