G26085


Basic Information

Item Value
gene id G26085
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12275235 ~ 12276054 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU30806
TGATCACATGCTAACATAGCATAAACTAAAAAATTGAGGTACCTGGATTCATAAAATATCTATACCCAATTCATCATTTCCATCACACATATGTACACAACTATACATGTCCATGCAGAAGGGATTCTCAGGTATGTATAACATGTTTTAGTAATAGCAACAAGCAGTTGATATGGTAACCACAAGCCAGTGCCATGTGTAACTAGTCTTTGGAAGTGGGTAGATTATGTAGAACTCAAGCTGTCACAAAgtaaagtgtggagaaaaaTATGGAGATAAAGGAAGAACTATAGGGATTTGTCATCTCTTTTACATTGTTTACACATATACTACCATCTCTGTTTCCACAGTTCAAGCAATTTAAATGTGACAAATTAGAGGAAACACCAACATAAATGTGTCTTAGTAAGGTATTGAAAGTTcgccttggcatagattctacaagtctctcgaactgtactggagggatgaacaccaaaAATATTCCCACAATTGgcgttttgatgatggtggtgaagagaactatttaaaatatcagatcaaaatctcccataggtgtgcAAGTGAGTTAagatatgatttacattatttttatctttgtcAAACCATTAAGCAACTCCTCTTGTTCTGTTGGAAagggcattgtcatcctggaagaggcCACTACCATCAGGACAGAAATggttcatcataggataaaagTGCTCACTCAGAATAAATTTGCAGTGATAATTGTCTCTAAGGAGACAAGTAGACCCAAACCATACCAGCAAAATTCCcctacagcataacagagctactggtttcctttaatttgtca

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU30806 True 820 lncRNA 0.37 1 12275235 12276054

Neighbor

gene id symbol gene type direction distance location
camk1a camk1a,LOC108271991,LOC108427562,LOC107708108,LOC107680695,LOC107713533,LOC107667041 coding downstream 30984 12223244 ~ 12244251 (-)
ca16b LOC108272134 coding downstream 149576 12043629 ~ 12125659 (-)
tardbp LOC108271795,LOC108427558,LOC107555974,LOC107713527 coding downstream 233937 12035632 ~ 12041298 (-)
LOC117596078 NA coding downstream 246575 12026728 ~ 12028660 (-)
epha2a LOC108271798,LOC108427555 coding downstream 266416 11996963 ~ 12008819 (-)
kcnb1 kcnb1,LOC108272148,LOC107667042,LOC107713536,LOC107680683,LOC107555957 coding upstream 564 12276618 ~ 12303048 (-)
ptgis ptgis coding upstream 29395 12305449 ~ 12356720 (-)
tarbp2 tarbp2,LOC107713493,LOC107666976,LOC107708175,LOC107561017,LOC107680718 coding upstream 156156 12432210 ~ 12438065 (-)
zgc:66479 NA coding upstream 163609 12439663 ~ 12443661 (-)
LOC113530111 LOC108271575,LOC108427572 coding upstream 171383 12447437 ~ 12469680 (-)
G26082 NA non-coding downstream 4980 12269874 ~ 12270255 (-)
G26077 NA non-coding downstream 5423 12264692 ~ 12269812 (-)
LOC117596184 NA non-coding downstream 60433 12212988 ~ 12214802 (-)
G25723 NA non-coding downstream 337432 11937615 ~ 11937803 (-)
G25575 r3hdm2 non-coding downstream 502945 11752487 ~ 11772290 (-)
G26117 NA non-coding upstream 199093 12475147 ~ 12485954 (-)
G26124 NA non-coding upstream 225644 12501698 ~ 12502087 (-)
LOC113530116 NA non-coding upstream 276699 12552753 ~ 12553617 (-)
G26134 NA non-coding upstream 281546 12557600 ~ 12558161 (-)
G26138 NA non-coding upstream 284978 12561032 ~ 12561243 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 511100 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 789766 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 1341071 10916042 ~ 10934164 (-)
G24760 NA other downstream 1784940 10489293 ~ 10490295 (-)
G24516 NA other downstream 2406957 9863367 ~ 9868278 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 1217458 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 1356208 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 1364327 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 1588890 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 1774347 14050401 ~ 14058445 (-)

Expression


Co-expression Network