G26385


Basic Information

Item Value
gene id G26385
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12794238 ~ 12794439 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU31146
CGTACAACATGGGACTTCTTCGCAACTGTTTATTGATTGATTCCTGGTCCACATCTTAGATGTATAGGGCCACCTACTGTCTGAATGTGCTGAGCATGCACATATTCGGTCAATCATTCAATCAGGAACTCAACGAGCAAAAAGAGCAGCCCTCTCTGTAATCCAACAAATTAAAATCTATGTAGCGTACATAACATGTAAC

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31146 True 202 lncRNA 0.41 1 12794238 12794439

Neighbor

gene id symbol gene type direction distance location
im:7151449 NA coding downstream 17281 12765448 ~ 12776957 (-)
grm4 grm4,LOC108272196,LOC108427575,LOC107708172,LOC107716363,LOC107549321,LOC107569297 coding downstream 63660 12568700 ~ 12730578 (-)
igfn1.1 LOC108272198,LOC108427574 coding downstream 251262 12519735 ~ 12542976 (-)
LOC113530099 igfn1.3,LOC107713484,LOC107561018,LOC107708174,LOC107666972,LOC107678151,LOC107549306,LOC108271616 coding downstream 275383 12502268 ~ 12518855 (-)
LOC113530111 LOC108271575,LOC108427572 coding downstream 324558 12447437 ~ 12469680 (-)
lrig2 lrig2,LOC107729721 coding upstream 110673 12905112 ~ 12923987 (-)
si:dkey-166d12.2 LOC108271835,LOC108427581 coding upstream 155246 12949685 ~ 13031045 (-)
slc2a1b LOC108427584,LOC108272033,LOC103036684,LOC106565867,LOC103355644,LOC106518313,LOC108231650 coding upstream 247956 13042395 ~ 13058767 (-)
st7l st7l,LOC103035765,LOC106582738,LOC106566045 coding upstream 367050 13161489 ~ 13173670 (-)
capza1a capza1,LOC108271791,LOC103046653,LOC106566046,LOC105908306,LOC106582739 coding upstream 383389 13177828 ~ 13189549 (-)
G26137 NA non-coding downstream 228178 12563790 ~ 12566060 (-)
G26138 NA non-coding downstream 232995 12561032 ~ 12561243 (-)
G26134 NA non-coding downstream 236077 12557600 ~ 12558161 (-)
LOC113530116 NA non-coding downstream 240621 12552753 ~ 12553617 (-)
G26124 NA non-coding downstream 292151 12501698 ~ 12502087 (-)
G26387 NA non-coding upstream 6568 12801007 ~ 12801233 (-)
G26570 NA non-coding upstream 276156 13070595 ~ 13070823 (-)
G26585 NA non-coding upstream 310018 13104457 ~ 13106086 (-)
G26610 NA non-coding upstream 374814 13169253 ~ 13169662 (-)
G26613 NA non-coding upstream 380638 13175077 ~ 13176159 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 1030103 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 1308769 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 1860074 10916042 ~ 10934164 (-)
G24760 NA other downstream 2303943 10489293 ~ 10490295 (-)
G24516 NA other downstream 2925960 9863367 ~ 9868278 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 699073 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 837823 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 845942 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 1070505 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 1255962 14050401 ~ 14058445 (-)

Expression


Co-expression Network