G26387


Basic Information

Item Value
gene id G26387
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12801007 ~ 12801233 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU31148
GTGGGTTTTGTGCTAACAGATGGAACCATGGATCAGTCATTAGGATTTTAGGCAATGCTCTCCTCTCTCTGGAGCCACCTCACCCCccactctccatctctctcctcctttcaTGAATGTGTCCTCTATCCATCATTAATATGTCTTAGATGAAATATGCTTTTCAACCCCGCGCTCAGATCTCTTCATGGTCTCGCCTGCCATTTATTTCACCAGGAGTTATTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31148 True 227 lncRNA 0.48 1 12801007 12801233

Neighbor

gene id symbol gene type direction distance location
im:7151449 NA coding downstream 24050 12765448 ~ 12776957 (-)
grm4 grm4,LOC108272196,LOC108427575,LOC107708172,LOC107716363,LOC107549321,LOC107569297 coding downstream 70429 12568700 ~ 12730578 (-)
igfn1.1 LOC108272198,LOC108427574 coding downstream 258031 12519735 ~ 12542976 (-)
LOC113530099 igfn1.3,LOC107713484,LOC107561018,LOC107708174,LOC107666972,LOC107678151,LOC107549306,LOC108271616 coding downstream 282152 12502268 ~ 12518855 (-)
LOC113530111 LOC108271575,LOC108427572 coding downstream 331327 12447437 ~ 12469680 (-)
lrig2 lrig2,LOC107729721 coding upstream 103879 12905112 ~ 12923987 (-)
si:dkey-166d12.2 LOC108271835,LOC108427581 coding upstream 148452 12949685 ~ 13031045 (-)
slc2a1b LOC108427584,LOC108272033,LOC103036684,LOC106565867,LOC103355644,LOC106518313,LOC108231650 coding upstream 241162 13042395 ~ 13058767 (-)
st7l st7l,LOC103035765,LOC106582738,LOC106566045 coding upstream 360256 13161489 ~ 13173670 (-)
capza1a capza1,LOC108271791,LOC103046653,LOC106566046,LOC105908306,LOC106582739 coding upstream 376595 13177828 ~ 13189549 (-)
G26385 NA non-coding downstream 6568 12794238 ~ 12794439 (-)
G26137 NA non-coding downstream 234947 12563790 ~ 12566060 (-)
G26138 NA non-coding downstream 239764 12561032 ~ 12561243 (-)
G26134 NA non-coding downstream 242846 12557600 ~ 12558161 (-)
LOC113530116 NA non-coding downstream 247390 12552753 ~ 12553617 (-)
G26570 NA non-coding upstream 269362 13070595 ~ 13070823 (-)
G26585 NA non-coding upstream 303224 13104457 ~ 13106086 (-)
G26610 NA non-coding upstream 368020 13169253 ~ 13169662 (-)
G26613 NA non-coding upstream 373844 13175077 ~ 13176159 (-)
G26788 LOC108271946 non-coding upstream 709143 13510376 ~ 13568936 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 1036872 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 1315538 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 1866843 10916042 ~ 10934164 (-)
G24760 NA other downstream 2310712 10489293 ~ 10490295 (-)
G24516 NA other downstream 2932729 9863367 ~ 9868278 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 692279 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 831029 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 839148 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 1063711 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 1249168 14050401 ~ 14058445 (-)

Expression


Co-expression Network