G26610


Basic Information

Item Value
gene id G26610
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13169253 ~ 13169662 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU31418
CTTTATTCGGATGTTTTGtatacagaaacattttgtaTTCTAATTGAGCTGTCAGTCAGccataatgtatatatatatatataaaatctctCTCACTgcccactttaataggaacacctgtatacctgttTATTTGAGCAGTTATCCAAtctgccaatcatgtggcagtagcacaatacataaaatcatgcagatacagttcaagagcttcagttaatgttcacgtgaAACATCATAATGATGAGATAGCATGagctctagagtttacacagaatggtgaaaaaaaacaaaaacatatagaTTGGTTCGAGcagccaggaaggatatagaaactcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31418 True 337 lncRNA 0.35 2 13169253 13169662

Neighbor

gene id symbol gene type direction distance location
slc2a1b LOC108427584,LOC108272033,LOC103036684,LOC106565867,LOC103355644,LOC106518313,LOC108231650 coding downstream 110486 13042395 ~ 13058767 (-)
si:dkey-166d12.2 LOC108271835,LOC108427581 coding downstream 138208 12949685 ~ 13031045 (-)
lrig2 lrig2,LOC107729721 coding downstream 245266 12905112 ~ 12923987 (-)
LOC113526469 magi3,LOC108427579,LOC107569295,LOC107668158,LOC107729719,LOC564220 coding downstream 267229 12789724 ~ 12902024 (-)
im:7151449 NA coding downstream 392296 12765448 ~ 12776957 (-)
capza1a capza1,LOC108271791,LOC103046653,LOC106566046,LOC105908306,LOC106582739 coding upstream 8166 13177828 ~ 13189549 (-)
rhoca rhoc,LOC108427591,LOC103035456,LOC108271788,LOC105908082,LOC107729745,LOC107668165,LOC105902219 coding upstream 45279 13214941 ~ 13231740 (-)
ppm1j ppm1j,LOC108427592,LOC107666087,LOC107668166,LOC107729744,LOC107708158 coding upstream 65274 13234936 ~ 13251911 (-)
LOC113537313 NA coding upstream 69042 13238704 ~ 13238806 (-)
si:ch211-105j21.9 NA coding upstream 320532 13490194 ~ 13493259 (-)
G26585 NA non-coding downstream 63167 13104457 ~ 13106086 (-)
G26570 NA non-coding downstream 98430 13070595 ~ 13070823 (-)
G26387 NA non-coding downstream 368020 12801007 ~ 12801233 (-)
G26385 NA non-coding downstream 374814 12794238 ~ 12794439 (-)
G26137 NA non-coding downstream 603193 12563790 ~ 12566060 (-)
G26613 NA non-coding upstream 5415 13175077 ~ 13176159 (-)
G26788 LOC108271946 non-coding upstream 340714 13510376 ~ 13568936 (-)
G26970 NA non-coding upstream 477785 13647447 ~ 13694820 (-)
G26985 LOC108271615 non-coding upstream 514461 13684123 ~ 13685782 (-)
G27016 NA non-coding upstream 619131 13788793 ~ 13791366 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 1405118 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 1683784 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 2235089 10916042 ~ 10934164 (-)
G24760 NA other downstream 2678958 10489293 ~ 10490295 (-)
G24516 NA other downstream 3300975 9863367 ~ 9868278 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 323850 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 462600 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 470719 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 695282 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 880739 14050401 ~ 14058445 (-)

Expression


Co-expression Network