G26788 (LOC108271946)


Basic Information

Item Value
gene id G26788
gene name LOC108271946
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13510376 ~ 13568936 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU31618
AAAAAAGGGTTggGGTCATTTTGATTATAGTGCCTCCATAGTGACACCATCCTCCCTCACTGAGGGGAAAATGTTTACAGATCCTTCTAGAAGGATGTAGAGCACCATCTCATGCACACCTCCTGCAAAAGCCCTTACCATCAAGTGTAAAATCTGGCCACAGCCACTCAAATGAGTGAGCAAACCAGACAGGAAGTGCAGTAAGGCCAGGAACTGGCTAAGGAAACAATCGACAGCACACGTGTCGATCTAAATCTAGTctttatatgaatgtgtgtgactcATGTCCCCAGCACAGGTTCATCTGAGGCAGTTCTGGAGACTTGCTTAAGGAGACAGGAGGTTAAATGCTCTTTGGCCCAGAATGAATTCACCAACTCCAACAAAATACATAACTTGAGCAATTCCAAAAAGAGGTGCAATGACAAGTGCCCTGCAGCTTGCCCCCTTCAGGAAAGCAGATGGTCCTTCTTTCTTCATGATCTTGCTATAAAAATCAAAGAGCAAAACAAGTGTCAGCCACAGCTCACTAAACATTTACAAGCAGCTGCAATCAGACTGCAAAAACAATCAATAAACAGATGGCACAAAAACACCATTTCCTTTTCTGTTACCAAAACCTCGAGACTGAGACCAAGTTGATATTTTCTAACTACTAAACTAAATGAGCAATTTTTAATTGGAGCAATTCATTTAAGACACCTAAAATTAGATTTGACAAACTGGACAAACACTACTACCCCAAGActattattcaaataaaaataaaaagtcccAGTATAACggacatgaaaataaacagcacCTCTGCTCATTTTCCCCCTCTGTTTTCTGACTTTCCCCCAGAAATTTCTGTTGATGTTGGCCCAATATCAAACCTGTGCCATTTCTATTAAGCAAGATGAAATTTTTGGAGAACTTTCAAATAATTGCTTTGAATAATTACCTCACACAGTCCAGAACTCCATTGTAGGTCTCCTCATTTGCACCTTTGCTCAAGGACTGAAGCCTGGTTTTTACCACTGAAACATATGAACAGGAAATGAGCTTGTATAGAAGCAGGAAATAGTGGGGtaagaaccacacacacacacaaaaaaaaaaacaccttactCACCATCACATGGGCTAACTGCCACTGCAGCAGTTGAACCAGCTACACAGCCAGCCATGAACGACCAATAGAATGGCGCCACATCATCTTCAGAACGCTTACCCAAACggttaatgttagcaaaaagAGGAAAGTAGACAATGGAGAAGGGCACATCTCTGGATGTAAagagaagattaaaaaaaaaaaataattaaatcacaCCAATGTATCACAAAGTGCTGAGAATTAGACCAACTTTTTAAACCAGGTGCTAAAATGCACATCTAGTACATGCACATGTGCTTACCTCATAAGTGTTGCTCCTAGCCCTTTGTATAGACCTTGGATGCCCTCTGTGTATAGCAGCTCTTTGGCGATCTGCGTTGCAGAGATAGTTTGGGCAGCAGAGCTTGGCACTACATTATAGGAGCGGCTCAGCACAGTGCTGGTCTGAGCCAGCTTATTGGGAGCCAGGATACCAGGCATTCTCTGCTGAGCAGCTGCAAGgatttttaatatacacaattacatttattttgtttatttattttacaaacatttactgtatactAGGGAATACAGGATAGCAAACATGGGCATACAAGAGATACCACCAAGCTGAGAAATCTGTGGCCTTAAATAACATGAGCAAAAGGAAGAGTATAAGCTTACCTAGTCTTCCAGCATCTTGCAGCTGAATTTTCAGCATCTCCATAGGAGTAGTAATGATGACTTGGCACATGCCTGCACCACAACCTGCTAACATTTCTTTAAACACTGACAACCCCTTCCTGTAACAGAGCAAAAATACAACAGTCATGGGATACTGTATGCATAAATCACTGTTCTCAGAATTTCCTAAAGCAATGCGTACCCATCCTTGGCAAGGTGGTGACGAAAGAAGTCATTGGCTGCCAGCTTGATGGCCTTTTCAGGTGTGACAAGAGCAAGATTCACTGCAGCACCtagaagacaaaaacacagcaggttAGCCAAAAGAGTAGCAAAAGGTTTACCTATACAAATCTCACAGGGCACCCATTCCCCACCACCATCATaccaaagacaaaaacagaaccATGCTATGTATTAATAAGAATTAGTAAATATCCAACAGGATATGAGCAAAGCTCAAATGACTATGGAATGATCATGGAGGGGGATTTGGCATAATGAAACTGAGaaccaataaacaaaaactTAGAATATTAgacaaaaaagaatgaattatgAGGAGCATAAAAGaaggaagatgaaaaaaaaaatagagacagTTTCTAGTTCAAGATCCCTCTGCCTTAAAGAGCAAGGGACAGTGGCAGATAATGTATAGCCATGTATGTATAGAATGGGAGGGAAGGATGTgtgaggaggagaaaaaaaaaaaaaaaaaaaaagaagtcagtGAAAACTGAAATCTCAAGATGGTTAGAAAGACATGTAGTTCTACAGTACATGGCCAAAGGAGTTAGTAATAGTAGACAAAATGAAGACAGTCAACAGAAATTCAGAGGCTATGAAGAAAACAAAGGAGCAACaattattcaaaaaataaacacattgtgCCTAATTGTAATAGAGCAGAGTGTAAAGAACCATGATAAATGATTTGCCTCCAGCGTGGCTGCGCCTTAATCGGCTAGCCTTCACTATCCCAGGGGGGACCCATGtctgtaacatgaaaaaacaCAGATGCAAACAAACAGCATTCCTCACATCAAGCAACAACCCAATACAAACATGGGCTGTTATGCTCAAAGATCTGCTACCTCAAGTTCAGTTCATTTCAGAActaccatgtaaaaaaaaaaaaaaaaaaaaaaataaataaataaaaataaaaaatgctccaatagggtttgtgtgttttgtaggtGATAATAAAAAGTCTACAATTTAACTGGTAATTAAGTGCAGCAAATTAATAGTAACCACTGTACAATTGTGGACATTGTGGTTTGTATGTCTACATAGATGCATGCAAACTCTACATAGATCCAACCATTGTGAATTTTTTATTCTACTGTAGAACAGCATAAAACCAGTTAACCAGTTCTGCTGTCATGAACCACAGGCAAGTGGATTTAAGCACAGCTTAAATGTCAAAGTAGAAGAAGCCATAGGCTACTATAGCTCAAAGTCCATAATCATTTGTTGTTAGCATAAGCCACATGGTGAAACACTCAATGTAGGCTGAATCTTACCTCTGTACATGCCAAAGTACCCCTCTGATCGCACTGTTTTGACCAGACAATCCATcctaaaaaagaaaaccaagTTAAACCACTGCAATCAGTATTCCAAGACCATATCACCATTTGGACACACCTACTCGTACACAAATAGCAACCTGGCCCCAGGGTTTTAATCCTATGAGAATTTTGTTCTTCAGAAGCTATGGACTACAAAAGCTGAAAGAGAACACCTGTCTATGTTACACAGTCCAATGAGATTAAGCATTGCTATTGGAGGGAATGGACCACCTGAGGCTAAACACACAATCAGGGCGTGGCTACAGTGGGCCCTGAATATCACATGATGTGTACCAGGGGCCAGAACAGGTACATGTACTGGAATAACAGGAAAGACCAAGAGAAAGGTTTGCTTACATGTTCTTGTAGACCTGTTGACCTTGTCTCTGGTTCTGTAGTCGAGTCTTAGCCAGGTCAATGGGGAACACACAAGTgacaccaacaacaccagcaATACCACCATTGATGAGCTTGGCTGGGAGACTAagcaagaaaagaaagtaaaggCAAGGTCAAACAAATTCATAAGTGAGACACAGTGGCGTTTCACAGACAAGCCAGTCAAAACTTCCTATGCATACAGTACCTGATCTGCTGCTGAGACATTGTGAAATATCGGAAATGTGGATAATTAGCAGAGAAACGATACTGAAATGCTTGATTACGCAGGACAGGAACGGTGGTGGAACCTGAAAGTAGACAGAGTGAGGACAGTTTACCAATAAACATGTGTgctggtaaacacacacacagagctaaagtAGGCGTGTGATGAGCTCTGGCCAGGCGGCTCAGGGGTCTCTCACAGGCCCTCTGGAAATAGACACAGCCTTGTTAATATACATGAGCTCACGACACTAGTCATATGATTGTCATATGCTAAATTTAGAatcagaaatataatttatttaaccaTTACCTACACATCCTTTAacggaatatatatatatagtgtgtcaGTCTGCCATCTTTGGCTTTATTTCTAAAAGTACCCAACATATCAAACCCACCATGTCATACATGTCGATGGCAGTTAGCCATAAATGAAAGCCCGCTAAAACCAAGCtaaggcatttaaaaaaacatgctaagggattaaaaaacaaaacaagataaGGGATTAAAAACTAACCCCAAAACAATTCGTACGCTTTTTGTTCTAatttgtttaacaaaatatttcgCAACTAGATAACACTCTTTTGCCGGTAGGCAACACTAGCCGACTAGCTAACCTCACAGACCAATGGCTGTTAGCTTGTTTCCAGAAAACGACACACTGCCGAGGTGAAGCAGTTCTCTAGCTCGCGTCGTTGAGTCATTTGTATTACTGAGAGATACTCAAGAACCATTTGTAACTGGCTGGTTGGCTAAATTAAATCAACACTGCTGAATAATGTTAGCAGGCTTCACGGAAATTTTGAATATAAACGGCTAATGATTAAGCTAACACGTTAGCTAAGGAGCTAACCAACTCTAAACCAACAAACACAATTTTAACGACAAACTGTTTAGAAAAACCGTGAACCTAAGATTTACAGTCTACAAAAAAGGAACACTTACCCTTTTAATCAACTGTAAACCACTAACTATGCTTAAATATTAAAAGGCGCCGAAACTGCTTCCGTACGTTACA

Function

NR:

description
PREDICTED: mitochondrial glutamate carrier 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31618 True 4984 lncRNA 0.40 3 13510376 13568936

Neighbor

gene id symbol gene type direction distance location
si:ch211-105j21.9 NA coding downstream 17117 13490194 ~ 13493259 (-)
ppm1j ppm1j,LOC108427592,LOC107666087,LOC107668166,LOC107729744,LOC107708158 coding downstream 258465 13234936 ~ 13251911 (-)
LOC113537313 NA coding downstream 271570 13238704 ~ 13238806 (-)
rhoca rhoc,LOC108427591,LOC103035456,LOC108271788,LOC105908082,LOC107729745,LOC107668165,LOC105902219 coding downstream 278636 13214941 ~ 13231740 (-)
capza1a capza1,LOC108271791,LOC103046653,LOC106566046,LOC105908306,LOC106582739 coding downstream 320827 13177828 ~ 13189549 (-)
rplp2 NA coding upstream 58032 13626968 ~ 13629546 (-)
acvr1bb acvr1bb,LOC108271957,LOC108427611,LOC107690814,LOC105017213,LOC107686786,LOC106583225 coding upstream 138518 13707454 ~ 13727074 (-)
LOC113533843 NA coding upstream 169607 13738543 ~ 13742560 (-)
cfap100 cfap100 coding upstream 461828 14030764 ~ 14044325 (-)
LOC113531636 chst13,LOC106565240,LOC104944027 coding upstream 560905 14129841 ~ 14147849 (-)
G26613 NA non-coding downstream 334217 13175077 ~ 13176159 (-)
G26610 NA non-coding downstream 340714 13169253 ~ 13169662 (-)
G26585 NA non-coding downstream 404290 13104457 ~ 13106086 (-)
G26570 NA non-coding downstream 439553 13070595 ~ 13070823 (-)
G26387 NA non-coding downstream 709143 12801007 ~ 12801233 (-)
G26970 NA non-coding upstream 78511 13647447 ~ 13694820 (-)
G26985 LOC108271615 non-coding upstream 115187 13684123 ~ 13685782 (-)
G27016 NA non-coding upstream 219857 13788793 ~ 13791366 (-)
G27043 NA non-coding upstream 266894 13835830 ~ 13836482 (-)
G27105 zxdc non-coding upstream 458366 14027302 ~ 14028884 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 8206 13493512 ~ 13502170 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 1746241 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 2024907 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 2576212 10916042 ~ 10934164 (-)
G24760 NA other downstream 3020081 10489293 ~ 10490295 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 63326 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 71445 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 296008 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 481465 14050401 ~ 14058445 (-)
pxmp4 pxmp4,LOC103464829 other upstream 1304012 14872948 ~ 14875990 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033152 NA non-coding NC_007117.7 CM002890.2 49100879 ~ 49104192 (-)