rps26l (rps26,RPS26,rps26l,LOC107708153,LOC107554198)


Basic Information

Item Value
gene id rps26l
gene name rps26,RPS26,rps26l,LOC107708153,LOC107554198
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13632262 ~ 13634744 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU31814
CGCCTCTTCCGGTCCTCTTTCCTGCCTCCTTTCCAAGATGactAAGAAGAGAAGGAATAACGGACGCGCCAAGAAGGGCCGTGGGCACGTTCAGCCTATCCGCTGCACTAACTGTGCTCGGTGTGTACCCAAAGACAAGGCCATCAAGAAGTTTGTGATAAGGAACATCGTTGAGGCTGCAGCCGTCAGGGACATCTCGGAGGCTAGTGTATTTGACTCCTATGTGCTGCCCAAGCTCTATGTGAAACTGCATTATTGCGTGAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGTTCTCGGGAGGCCCGTAAAGACCGGACACCACCTCCACGCTTTAGGCCTAGTGGTGCTGCCCCCAGAGCTCCTCCTAAGCCTATGTGAAGAATGAGTCAAAAACTGTACATTTATgtgcaaagaaataaaatgatttgatgAGAAAATATTGTCTTGTATGAGTAGTACTTTTAATGGATTGGGTTG
>XM_026922243.2
AGTTGGTTTTTATCATTGTTACAtttctgattataaaatacCCAGAATCTTTTTTCTTTGAGCGGAGGAAGTACGTTATTACAGTTCCGGTCCGCCTCTTCCGGTCCTCTTTCCTGCCTCCTTTCCAAGATGactAAGAAGAGAAGGAATAACGGACGCGCCAAGAAGGGCCGTGGGCACGTTCAGCCTATCCGCTGCACTAACTGTGCTCGGTGTGTACCCAAAGACAAGGCCATCAAGAAGTTTGTGATAAGGAACATCGTTGAGGCTGCAGCCGTCAGGGACATCTCGGAGGCTAGTGTATTTGACTCCTATGTGCTGCCCAAGCTCTATGTGAAACTGCATTATTGCGTGAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGTTCTCGGGAGGCCCGTAAAGACCGGACACCACCTCCACGCTTTAGGCCTAGTGGTGCTGCCCCCAGAGCTCCTCCTAAGCCTATGTGAAGAATGAGTCAAAAACTGTACATTTATgtgcaaagaaataaaatgatttgatgAGAAAA

Function

symbol description
rps26 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 10. Orthologous to human RPS26 (ribosomal protein S26).
rps26l Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit.

NR:

description
PREDICTED: 40S ribosomal protein S26

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02976 RP-S26e, RPS26; small subunit ribosomal protein S26e

RNA

RNA id representative length rna type GC content exon number start site end site
TU31814 False 484 TUCP 0.49 4 13632262 13634652
XM_026922243.2 True 536 mRNA 0.48 4 13632302 13634744

Neighbor

gene id symbol gene type direction distance location
rplp2 NA coding downstream 2716 13626968 ~ 13629546 (-)
ngfb ngf,ngfb,LOC103031633 coding downstream 88128 13532981 ~ 13544134 (-)
tspan2a NA coding downstream 101627 13516180 ~ 13530635 (-)
si:ch211-105j21.9 NA coding downstream 139003 13490194 ~ 13493259 (-)
ppm1j ppm1j,LOC108427592,LOC107666087,LOC107668166,LOC107729744,LOC107708158 coding downstream 380351 13234936 ~ 13251911 (-)
acvr1bb acvr1bb,LOC108271957,LOC108427611,LOC107690814,LOC105017213,LOC107686786,LOC106583225 coding upstream 72710 13707454 ~ 13727074 (-)
LOC113533843 NA coding upstream 103799 13738543 ~ 13742560 (-)
cfap100 cfap100 coding upstream 396020 14030764 ~ 14044325 (-)
LOC113531636 chst13,LOC106565240,LOC104944027 coding upstream 495097 14129841 ~ 14147849 (-)
txnrd3 txnrd3,LOC105934676 coding upstream 523640 14158384 ~ 14172056 (-)
G26788 LOC108271946 non-coding downstream 63326 13510376 ~ 13568936 (-)
G26613 NA non-coding downstream 456103 13175077 ~ 13176159 (-)
G26610 NA non-coding downstream 462600 13169253 ~ 13169662 (-)
G26585 NA non-coding downstream 526176 13104457 ~ 13106086 (-)
G26570 NA non-coding downstream 561439 13070595 ~ 13070823 (-)
G26970 NA non-coding upstream 12703 13647447 ~ 13694820 (-)
G26985 LOC108271615 non-coding upstream 49379 13684123 ~ 13685782 (-)
G27016 NA non-coding upstream 154049 13788793 ~ 13791366 (-)
G27043 NA non-coding upstream 201086 13835830 ~ 13836482 (-)
G27105 zxdc non-coding upstream 392558 14027302 ~ 14028884 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 130092 13493512 ~ 13502170 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 1868127 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 2146793 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 2698098 10916042 ~ 10934164 (-)
G24760 NA other downstream 3141967 10489293 ~ 10490295 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 5637 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 230200 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 415657 14050401 ~ 14058445 (-)
pxmp4 pxmp4,LOC103464829 other upstream 1238204 14872948 ~ 14875990 (-)
G27843 NA other upstream 1662565 15297309 ~ 15299019 (-)

Expression


Co-expression Network