fkbp11 (fkbp11,LOC108271940,LOC108271564)


Basic Information

Item Value
gene id fkbp11
gene name fkbp11,LOC108271940,LOC108271564
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13640381 ~ 13647177 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU31828
GCGGGGCTCCAGATAGCCAGGTGTTAGGACAGAGATCGCCGCTGCTGTGCTTTTATCATTCCGCTAGAATAACACATCAGCCTTAACTGGCGTCGAGCCGCACGCTATTTAagttgtgtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgagagagagattcatcGTCGGTGCAAAGCCGTCGCCTTTTATTCACGACGCGTCCTGCAGGGAggaacatttgttttttttttcacggaAGTTAAACAGCTTCCCTCGTGTTATCAGGCGcttgtgtttgatgtgaagaGGTACAATGTTATTGAGGAGTggtgctgttgttgctgtagtGTTGCTCGCCGGCTTGGTCTTGGCTGCAGCAGATGACAGTGAGACGGAGAAAAATGTCGCGGAGTTAGAGGTGGAAACGCTGGCAAAGCCGGAGACATGCACAGTAACAGCAGTGATGGGGGACACGCTTCATATCCATTACACGACAAAAAATCAAGGCCACCATTCCTGCACATCTAGCATATGGAAAAAGAGGATACCCTCCAACTATCCCAGGTGACTCCGCTCTGGAGTTCGAGGTGGAGGTGATCTCCCTGGTGCAGCAGACGCCATGGCAGAAGCTGGTGAATGATGTCTTTCCTCTTGTGTGCCTGGCACTAGTTCCCACTTTACTGGGACTGGTGGGTCTCTACCTCTACAAGAAGGCCAACGCACAACCTCAAGGCAAGAAGAAGAGCAAGGACAAGAAGagcaagaagaaataaaaaggacATGGAAGGAAcaat
>XM_026917278.2
TTAGGTCACATGGACTCAGCTACCTCTGACCTAACAAGCAAAACCCAGCAAATGAGTTGTAAAAATAACCCAggatttttacagtgtatttacagtacagCGTCTCGAGTGCGCCAGAAGAACAGAATCCCGACTGAACCGTGTGAAGAAGCGGTTAACGGTGTTAAGCGCTGGAACTTGAGCTCGCGCGCGACTCTACCGCCGCCTGGTGTGAGCAGGCGGAAGTGCACTGTCACTCACCGCGGCGTGCAGAGACTTCTGGGATGCTGGAGGAATGCTGGAGGCGGGGCTCCAGATAGCCAGGTGTTAGGACAGAGATCGCCGCTGCTGTGCTTTTATCATTCCGCTAGAATAACACATCAGCCTTAACTGGCGTCGAGCCGCACGCTATTTAagttgtgtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgagagagagattcatcGTCGGTGCAAAGCCGTCGCCTTTTATTCACGACGCGTCCTGCAGGGAggaacatttgttttttttttcacggaAGTTAAACAGCTTCCCTCGTGTTATCAGGCGcttgtgtttgatgtgaagaGGTACAATGTTATTGAGGAGTggtgctgttgttgctgtagtGTTGCTCGCCGGCTTGGTCTTGGCTGCAGCAGATGACAGTGAGACGGAGAAAAATGTCGCGGAGTTAGAGGTGGAAACGCTGGCAAAGCCGGAGACATGCACAGTAACAGCAGTGATGGGGGACACGCTTCATATCCATTACACGGGGCGGCTTTTGGACGGGAAGGTGATAGACTCCTCTCTGTCCCGTGATCCACTGGTGGTCGAACTTGGGAAGCGAACTGTCATCTCAGGTCTAGAACAAGCCCTGGTTGGTGTCTGTGAAGGACAAAAAATCAAGGCCACCATTCCTGCACATCTAGCATATGGAAAAAGAGGATACCCTCCAACTATCCCAGGTGACTCCGCTCTGGAGTTCGAGGTGGAGGTGATCTCCCTGGTGCAGCAGACGCCATGGCAGAAGCTGGTGAATGATGTCTTTCCTCTTGTGTGCCTGGCACTAGTTCCCACTTTACTGGGACTGGTGGGTCTCTACCTCTACAAGAAGGCCAACGCACAACCTCAAGGCAAGAAGAAGAGCAAGGACAAGAAGagcaagaagaaataaaaaggacATGGAAGGAAcaataaactatttaaataaaaaaattagaaaatctgaaaaaaaaaaattgtctggaGTGGCATCTTTCTAGTTGCATTGGTGTTTAtctgttgtgtttgttgtttacTTTGTATCACAGTTTTATCAAAAGATGAATCAAAAATAAGGGTGGAAAATTAAGTTTACGTCTTATTTCTTGCTGAGTATTTTTATAACGTACGAAATATAATCATGTTGATgtcagatatatacagtataattacaaaatatacTTTAAGAATGTGTTACAACATATACGTGTGTTACTTGCTTGAATTGTGCCTGTTTTCTCTCTAAAATGATTGAGATGTCTGGCATCTATGATGCATGTCTGACGCTGTCTTTGGAACAACATTTGCGTTTAGGCATGTGTGCTGCTTACATGTGTCTTCTCTACAGTGTGCGCTGCACCACATGAGCCGCCTCTATGACTgtcctgcgtgtgtgtgtttggctttcTGAAGCAGGAGAGGCTTGGAGTGATGGGCAGGACAACATGAGCAGTGAGTTCCTCTGCTGTAGGATCTCGTCGTTAACAGAGATTCCATCCAGGTACTGCTTGAGAAGAATCCTCAGCTGCTGGTTCTCCCATCCGAGGACCTTCTTCTCCCGTTCTAAACACAAACGTTCCAGTAGAACCTTGTTGTAACGCTGCCAGAACTTTTCTAGATCTGTATAGTCCATCATTGTCTAACAGCAGAGGAGAGGTGAaggcacaaataaaaaaaagtaagagcTGGAATAAAGAGCTTATTTTAGAAGTGTTAA
>XM_026917285.2
tgaagaGGTACAATGTTATTGAGGAGTggtgctgttgttgctgtagtGTTGCTCGCCGGCTTGGTCTTGGCTGCAGCAGATGACAGTGAGACGGAGAAAAATGTCGCGGAGTTAGAGGTGGAAACGCTGGCAAAGCCGGAGACATGCACAGTAACAGCAGTGATGGGGGACACGCTTCATATCCATTACACGGTCTAGAACAAGCCCTGGTTGGTGTCTGTGAAGGACAAAAAATCAAGGCCACCATTCCTGCACATCTAGCATATGGAAAAAGAGGATACCCTCCAACTATCCCAGGTGACTCCGCTCTGGAGTTCGAGGTGGAGGTGATCTCCCTGGTGCAGCAGACGCCATGGCAGAAGCTGGTGAATGATGTCTTTCCTCTTGTGTGCCTGGCACTAGTTCCCACTTTACTGGGACTGGTGGGTCTCTACCTCTACAAGAAGGCCAACGCACAACCTCAAGGCAAGAAGAAGAGCAAGGACAAGAAGagcaagaagaaataaaaaggacATGGAAGGAAcaataaactatttaaataaaaaaattagaaaatctgaaaaaaaaaaattgtctggaGTGGCATCTTTCTAGTTGCATTGGTGTTTAtctgttgtgtttgttgtttacTTTGTATCACAGTTTTATCAAAAGATGAATCAAAAATAAGGGTGGAAAATTAAGTTTACGTCTTATTTCTTGCTGAGTATTTTTATAACGTACGAAATATAATCATGTTGATgtcagatatatacagtataattacaaaatatacTTTAAGAATGTGTTACAACATATACGTGTGTTACTTGCTTGAATTGTGCCTGTTTTCTCTCTAAAATGATTGAGATGTCTGGCATCTATGATGCATGTCTGACGCTGTCTTTGGAACAACATTTGCGTTTAGGCATGTGTGCTGCTTACATGTGTCTTCTCTACAGTGTGCGCTGCACCACATGAGCCGCCTCTATGACTgtcctgcgtgtgtgtgtttggctttcTGAAGCAGGAGAGGCTTGGAGTGATGGGCAGGACAACATGAGCAGTGAGTTCCTCTGCTGTAGGATCTCGTCGTTAACAGAGATTCCATCCAGGTACTGCTTGAGAAGAATCCTCAGCTGCTGGTTCTCCCATCCGAGGACCTTCTTCTCCCGTTCTAAACACAAACGTTCCAGTAGAACCTTGTTGTAACGCTGCCAGAACTTTTCTAGATCTGTATAGTCCATCATTGTCTAACAGCAGAGGAGAGGTGAaggcacaaataaaaaaaagtaagagcTGGAATAAAGAGCTTATTTTAGAAGTGTTAA

Function

symbol description
fkbp11 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FKBP11 (FKBP prolyl isomerase 11).

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP11

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0006457 protein folding biological_process
GO:0016020 membrane cellular_component
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09576 FKBP11; FK506-binding protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
TU31828 False 775 lncRNA 0.50 4 13641164 13646894
XM_026917278.2 True 1963 mRNA 0.46 6 13640381 13647177
XM_026917285.2 False 1310 mRNA 0.43 5 13640381 13646612

Neighbor

gene id symbol gene type direction distance location
rplp2 NA coding downstream 10835 13626968 ~ 13629546 (-)
ngfb ngf,ngfb,LOC103031633 coding downstream 96247 13532981 ~ 13544134 (-)
tspan2a NA coding downstream 109746 13516180 ~ 13530635 (-)
si:ch211-105j21.9 NA coding downstream 147122 13490194 ~ 13493259 (-)
LOC113537313 NA coding downstream 401575 13238704 ~ 13238806 (-)
acvr1bb acvr1bb,LOC108271957,LOC108427611,LOC107690814,LOC105017213,LOC107686786,LOC106583225 coding upstream 60277 13707454 ~ 13727074 (-)
LOC113533843 NA coding upstream 91366 13738543 ~ 13742560 (-)
cfap100 cfap100 coding upstream 383587 14030764 ~ 14044325 (-)
LOC113531636 chst13,LOC106565240,LOC104944027 coding upstream 482664 14129841 ~ 14147849 (-)
txnrd3 txnrd3,LOC105934676 coding upstream 511207 14158384 ~ 14172056 (-)
G26788 LOC108271946 non-coding downstream 71445 13510376 ~ 13568936 (-)
G26613 NA non-coding downstream 464222 13175077 ~ 13176159 (-)
G26610 NA non-coding downstream 470719 13169253 ~ 13169662 (-)
G26585 NA non-coding downstream 534295 13104457 ~ 13106086 (-)
G26570 NA non-coding downstream 569558 13070595 ~ 13070823 (-)
G26970 NA non-coding upstream 270 13647447 ~ 13694820 (-)
G26985 LOC108271615 non-coding upstream 36946 13684123 ~ 13685782 (-)
G27016 NA non-coding upstream 141616 13788793 ~ 13791366 (-)
G27043 NA non-coding upstream 188653 13835830 ~ 13836482 (-)
G27105 zxdc non-coding upstream 380125 14027302 ~ 14028884 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 5637 13632262 ~ 13634744 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 138211 13493512 ~ 13502170 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 1876246 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 2154912 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 2706217 10916042 ~ 10934164 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 217767 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 403224 14050401 ~ 14058445 (-)
pxmp4 pxmp4,LOC103464829 other upstream 1225771 14872948 ~ 14875990 (-)
G27843 NA other upstream 1650132 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 1809458 15456635 ~ 15461001 (-)

Expression


Co-expression Network