G27016


Basic Information

Item Value
gene id G27016
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13788793 ~ 13791366 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU31888
TCTGCATGCACTTGACATGACTGCGTTGTTTCTTTTGCCTCCTCTCATAAAGCTATAATCATGTTATTCCTCTATTTAATCCCTCCCTCCATGCAGGGAGGGATCCTGTACCATTAACTCATTCCAGCTCACAGAGCAAAAAGAACAGGCTCTCTCATTTAGAGACTGAACATCCAGAAACAAACCCCCAAGCCAGGTTCAATTTAAATCAGAATTTGAAGGAATGCTTTCTAACTAGCTGAACTCTATTTGTGCATTGTATAAAGGCCAACATATCCAACCTATTTGGAACGTACCAACAGGGAGTGTGGCTAATAATTAACAAGGCAAAATTGAgttcatgtgtttgtgtgttttgttaaggAGTGGTTGGGAGATGGTGGGGTGTTAATTACAGAATTTAACCAGAATGCTTCACTGTCCTTCCACCCACCTACTCCCTCATTATAACAGTGTTTAGAGGAATGAAACAATGACATACCAGCTTTCTATTTAGCAGGAGCCAAAgtaaaatacacatacacacacacacacacacacataaaaggtGGCAGTGAGTAAGTAAGACCCATGCATGTGTAGTTACCATATACAAGGCaattaaaccaaaatacaaGGCTTTAATGCTGCTGGACAGATGTGAACAGACATGTAAAAATAAGTGTAGCAGAGAGCGAGCTCAAGGTCATACATTCTCACAGGTCACAATCAAGCTAACAATCCAATAACACCAATACCTCGTAGAAAGCTTATTCATTAGTGTTCAAGACCGTTGGTTGGTGTAACCCTGCCACGTGCTATAACATGTCTCATTTCATGCAGCAttatggtggattttttttttggaatagtAACATATTGTTTTATTCCATGCCTGTAGTTTGGTGAATAGCTTTTAAGTTGCCCTTTTGTTCAGTATTTTGGTTCAGAATTACAACACTGCAGGACAGTTAGATAAAAGCCTGTCTAACTGCCTCTGTGAGTTCATTTATAGccaacctcaacacacacattcctctaTGGCTGATAAGCAAAGAAAGGATGTAGAATTTGAGCTCAATCCAGCAGCAAACCAAAAACTTTGTAGTCACATagtatttgtttacatttagcaTCAGTGCAACTTCTGACAGCTGTTGAACTTTGCTTCTGTGGAAATGAGTCTGTTTGAGCGCAGTCAGATTTCAGAGAGATTGCTTTCGGTCACTGTGGAAGTCTACTGGCCAGACAAATGGACTCAACAGAACAATAGTAGAACAGATAGAACAATACTGACAAAACTGCTCTACTTCTTACTGACTTGAATGTTTTAGTACGAGATGCTAACAAACACCTAAACCTTGTAGCTCATAATTTACACAGCAGACAAAAGTGTTCACCTTGCACCCTTCAAAGCTCCAGCTGATCCCAAGGGATAAAAACAGACCTAGCTACCTCCTGTCTAGCTATAATTGGTCTGTGCCTGGCCACAGAGATGGGGGATGTACCAAGGGTCTAATTAAAAGAGAGGAACATGTTTTCATCTCAGGTCAGACTGGACTTTCAGGGTTGTTTGGAAGACAAACAATAATACCCGGTTGTTAAAGGATCAATGTTGGAAGCAGGGTGAAGAacagacgaaaaaaaaaaaaaaaattggttcaCTCTGAGCAGAaccaatatttttaatgttgccTTCTAAAATCAATATAACGTTGCACATCCATTTCATAACGTTCctgcttttctctcattctcccaAGTACAACCCAAACACAACCATGCGTGATTATCTGGCTAATGAAAACTTTAACATAATGTGGTCCTGTGATGAGAAAACTCTACAGTAATTTTCAAAACTTAATTGTTTCTTCATCCATGAACTGAAGGTGTGTAACGTTATAATTTATGCTACATTGTGTGTGCAAAATCACAGAGACATGCTGCAGATCATAAGACGTTTGGAGGTCAGACATTAATAATAAGCTAGTGGGCTGGACAGAATGAAAAAGTAAGGTTAATGTTTTGTTGCCTTTTAACAGTGAAGGATGATTATGCTACTGGTTACAGTTTCGTTCCTAGCAAAATATCTCTCTGGTTTTCGTTTCTGATCCTTGAACCACTTCATAGGTTGGCAGGAATCTCTACCTGCTCACATAAACCATGTgcatcacacatcacactaGCAAACTAACAAGcaccacacattcacattttcAATGTCAGATACTGGACTATAACAAACTAACAATTTGAAATTAGCTCCAAACAGTAAGTGggtatgcatttatttatcataattatgcagatatttagcatttaattcATGTAACTAATTAATATGATTAGGTAATTAATGTGACTAAAAAGGAGCATTCTTTTGATTCAAAGATTTATACTTTCGATGAAATATAGGAAGAATGTCCATTGTGGAAGGCAAAGCTGCTCTGGTTTGTAAACTGACAGAGTAATTGTGATTTTAATGGACTCCTAAAAACTACCAAGGAGGTTAAAGGAAATGGAAAAGCACTCATCACTCTAGAAAAGCTCAAGTGTTAATGGAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31888 True 2545 lncRNA 0.38 2 13788793 13791366

Neighbor

gene id symbol gene type direction distance location
LOC113533843 NA coding downstream 46233 13738543 ~ 13742560 (-)
acvr1bb acvr1bb,LOC108271957,LOC108427611,LOC107690814,LOC105017213,LOC107686786,LOC106583225 coding downstream 61719 13707454 ~ 13727074 (-)
rplp2 NA coding downstream 159247 13626968 ~ 13629546 (-)
ngfb ngf,ngfb,LOC103031633 coding downstream 244659 13532981 ~ 13544134 (-)
tspan2a NA coding downstream 258158 13516180 ~ 13530635 (-)
cfap100 cfap100 coding upstream 239398 14030764 ~ 14044325 (-)
LOC113531636 chst13,LOC106565240,LOC104944027 coding upstream 338475 14129841 ~ 14147849 (-)
txnrd3 txnrd3,LOC105934676 coding upstream 367018 14158384 ~ 14172056 (-)
plxna1b plxna1 coding upstream 486683 14278049 ~ 14457232 (-)
trnae-cuc_5 NA coding upstream 600914 14392280 ~ 14392351 (-)
G26970 NA non-coding downstream 93973 13647447 ~ 13694820 (-)
G26985 LOC108271615 non-coding downstream 103011 13684123 ~ 13685782 (-)
G26788 LOC108271946 non-coding downstream 219857 13510376 ~ 13568936 (-)
G26613 NA non-coding downstream 612634 13175077 ~ 13176159 (-)
G26610 NA non-coding downstream 619131 13169253 ~ 13169662 (-)
G27043 NA non-coding upstream 44464 13835830 ~ 13836482 (-)
G27105 zxdc non-coding upstream 235936 14027302 ~ 14028884 (-)
LOC117599875 NA non-coding upstream 272590 14063956 ~ 14099689 (-)
G27168 NA non-coding upstream 365572 14156938 ~ 14158099 (-)
G27169 NA non-coding upstream 381306 14172672 ~ 14172921 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 141616 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 154049 13632262 ~ 13634744 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 286623 13493512 ~ 13502170 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 2024658 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 2303324 11442471 ~ 11485469 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 73578 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 259035 14050401 ~ 14058445 (-)
pxmp4 pxmp4,LOC103464829 other upstream 1081582 14872948 ~ 14875990 (-)
G27843 NA other upstream 1505943 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 1665269 15456635 ~ 15461001 (-)

Expression


Co-expression Network