G27105 (zxdc)


Basic Information

Item Value
gene id G27105
gene name zxdc
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14027302 ~ 14028884 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU31990
cctggctgtggggatttgtccatttaaccacaagagcattagtgaggtcaagcactgatgtctggcgaggaggtctggggtgcagtcggtgtttcagttcatcccaaaggtgtccagtggggttgaggtcaggactcgtAGGGCAGGCCAGTAGAGTTCTTCCACTCAAACCTTGACAAAACATTTCTTCATGGATCTTGCTCTGTGCACAAGGGCACTGTCCTGCTGGTTTGGTTCTCTTAggcctttggccatatagtatatcagAAATCTGACTTATCCTAAAGCTCCTTATATTCACAAACAATACTATCCTCCATCTTGTTTGATGTTACTTGCCCCCTTGAGTGCAACCTGATTGATTGGGCAACAAAAAAGGCTCATGTCGATTAGCACTATGCTGAAATTTGACAATTTAGTGTTCAACtgcgggggaaaaaaaatggcagtatAATCAGTATAATGGCAGATAGTATATAATCATGCACTGGTGGTTAGGAtgctggtttatacttctgcgTTGAAACACATTTGCACTGCAATTGAAAAAAGGGATTTATGCTCAGTTGTGGTGCACAGGCACATACTAACATGTTACTCTAGTGGACACATTCAACACCCTCATACAACACCCTCAAGTGTTTGCAgatgcagaagtataaaccaggccaAACAAATTTGCATCCTCTGTCCTCTATACTCACAATAAAAGCACAAGAAGCAACTGAGGGCAGCTCCGTCTCTTTCTGCCCGCTGTAGGAAGAGCTGTGGCTAGGGAAAACAAACTGACTCAGAGCCTTGCTGTTCTCCGGCTGGCTCAGGCCCTCCACTCCACTTAGTAATGTCCCCACAGCTGCTTCACTGCCCCCCATATCAGCCTTTACCTGGGAAGACAGCAGCTCTGGTACTGCGGAAGACGCCAGAGACGGAACAAGAGAGGACGTGAGAGATGGAGCAAGAGATGACAGCGGTGACGAGAGAGtagaggagagggagggagtaAGGGATGGGGTCAGAGAGGAAGAAGGTGACTCTGCTGTTAAAGCACTGGAGGAGCTCAGGGCTTGGAGCTGCTCTGCGGCTGAGGTGCTCTGTATTGCCAAGGCCGTTAACGCTCCAAGTGCCTCAGGATTTACCGTCTGTACATCGTCCAGCTGCAGTGCTGCTTGCTGTAAGACCCCACCCCCTCCCCCTGCATCCAGGACATGTACCCCCATATCCCCACCTGCAGTCAAAATCAGAGGGTCCACAGGTTTGGCTCCTCCCAAAGCTGAGCCCACTGAGGCTGGATCTATGGTAAGAATCCCACTGCTCGCTAGAGCCATGTCCATGGTGAAGGGAGCAGGGCCTGACTGAGGGGTAGGACCTGCAGGTACAGTGGATGCTCCTGAGGGAACGTTGGAAAAAAGGGAGGAGAGATCCAGGCTGCTGAGCTCCGTTCCCACAGAGCCAGGAGTGGTGGCGCTCTGAGCAGCACTGGTGAGCTCGCAGCTAGGCGTCAGAGTGACCGTGTTTTCCAATTGACTCAACA

Function

symbol description
zxdc Enables C2H2 zinc finger domain binding activity; LRR domain binding activity; and transcription coactivator activity. Involved in positive regulation of transcription, DNA-templated. Predicted to be active in nucleus.

NR:

description
PREDICTED: zinc finger protein ZXDC

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31990 True 1531 lncRNA 0.51 2 14027302 14028884

Neighbor

gene id symbol gene type direction distance location
LOC113533843 NA coding downstream 284742 13738543 ~ 13742560 (-)
acvr1bb acvr1bb,LOC108271957,LOC108427611,LOC107690814,LOC105017213,LOC107686786,LOC106583225 coding downstream 300228 13707454 ~ 13727074 (-)
rplp2 NA coding downstream 397756 13626968 ~ 13629546 (-)
ngfb ngf,ngfb,LOC103031633 coding downstream 483168 13532981 ~ 13544134 (-)
tspan2a NA coding downstream 496667 13516180 ~ 13530635 (-)
cfap100 cfap100 coding upstream 1880 14030764 ~ 14044325 (-)
LOC113531636 chst13,LOC106565240,LOC104944027 coding upstream 100957 14129841 ~ 14147849 (-)
txnrd3 txnrd3,LOC105934676 coding upstream 129500 14158384 ~ 14172056 (-)
plxna1b plxna1 coding upstream 249165 14278049 ~ 14457232 (-)
trnae-cuc_5 NA coding upstream 363396 14392280 ~ 14392351 (-)
G27043 NA non-coding downstream 190820 13835830 ~ 13836482 (-)
G27016 NA non-coding downstream 235936 13788793 ~ 13791366 (-)
G26970 NA non-coding downstream 332482 13647447 ~ 13694820 (-)
G26985 LOC108271615 non-coding downstream 341520 13684123 ~ 13685782 (-)
G26788 LOC108271946 non-coding downstream 458366 13510376 ~ 13568936 (-)
LOC117599875 NA non-coding upstream 35072 14063956 ~ 14099689 (-)
G27168 NA non-coding upstream 128054 14156938 ~ 14158099 (-)
G27169 NA non-coding upstream 143788 14172672 ~ 14172921 (-)
LOC117596067 NA non-coding upstream 209911 14238795 ~ 14251264 (-)
G27254 NA non-coding upstream 325957 14354841 ~ 14401429 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 120113 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 380125 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 392558 13632262 ~ 13634744 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 525132 13493512 ~ 13502170 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 2263167 11686745 ~ 11764135 (-)
G27107 LOC108272123 other upstream 21517 14050401 ~ 14058445 (-)
pxmp4 pxmp4,LOC103464829 other upstream 844064 14872948 ~ 14875990 (-)
G27843 NA other upstream 1268425 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 1427751 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 1433066 15461950 ~ 15495209 (-)

Expression


Co-expression Network