G27107 (LOC108272123)


Basic Information

Item Value
gene id G27107
gene name LOC108272123
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14050401 ~ 14058445 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU31994
AAATCTTAACCACAAACAACAATTCCCCTTTGTTTAATTTGCCTCTCAACCTCCCCACCCTTAAAATCATACAggttttatttacatacattcaTAGGATGTGGCTAAAAACACCTGTGTGTTAACAAGTATTCATAAAATTCATTCTATGAATGAAAGGAATGCCATTATATATGTACAGTGGGCCCCTTGATCAGAAAGAGAACACACATGAAACAGATAAGGAAGTAAGTCTCCCCACTTCCAGAAGTGCccagaaaatattaataaacactaaataaaacatggcaccaACACTACTGTGGTTTTGCCTACTTCAGCCACAAGCACCTTGGTATGTCCACACTACTTACCCAACTTTCCTAACAAACATGAACAAACGCAAACATGCTGGTGTGTAATCGTTGTAAAGTTACAGTATGTAATCCTCAAACTGTAACATAACCATTTTATCTTGACCACTTTGGGTTCACTGAAAGTAACAGCTACAGTGTTTCATGTTCATGCTCCTGTTTGTGTGAAGGTGCGGGGGAGTGGGGTAGACAGATGTAACACCAGCATTAGTATCACAATGATCTGTAGGTAATCCAGTAACACACTGGAGTTTGGAGGCATATTCTGTGtcacaggaaataaaataataaaacagaaagagaagacACTTGGGTCCAAATGCTCCATGTGCTTACAAATATCAAGTGAATCTCATTTAGTGTCACTGCTGCTAAGTGCTAACTACGAGTATAAATGATTAACACTCTTAGTTATTACTCTAAGTTGTTTGATTGGGTCACATTCCTTCATGAACTTCATGAGTTGTTCTGAAATGCTGAGACTGGGTTTACAGCGTCCCCAGCACCCAAGTCAGACCTGAGATAAGAGCTTTGTGGTTGACTAAGGCCAAAAACACAGCAGAGCCATTAAGAGGcgacattaataaaaatacaaacaccTTATTACAAAACAGCTTGCCTTAAAAGCAAAAATGAGATTTTCAACACTGATTGAAGGTGTACATATTAAACATGTACAATCGACATTGTCCTCGTTTTTTGCATTTCTATTGTCGTTCTGCACTCACATAAGAATGATGTGGTTTATGAAAGTGTCCCCATAGCTTATTCAAATCGACTGATCCCCATTAGCACAGTCTGTATTAATGCCAGTCTGCTCTTCTTTGTAATCCATACAGAATGTAGCACCAAAGATAACAATACATTTTGCCTTTGCTCTGCCActgagatttaatttaaaacactataaatatgAGGGCAAAGTAGAAATGCTCAGACATGATACTTCTTACGGTTCCAACAGTTTCCTCTCACCTATTCACACACACCAAATTCGTTGTGATTTTGTGGTTCAGTGAGTGCAATGGGGGTGGGATCAGGCAGCAGTGCGGACTGTCCGGCTGTTCCTGGGAAAGCGGTGGACTTTGATGTGCTTTGATAGGTGATCACTGCGGGCAAACTTCTTCTCACACACGGGACACTGGTACGGCTTCACCCCAGAATGGGACCGCCGGTGACGGGACAGCTCATCCGAGCGGGAtccaTACACAGCCAGGCCAGTTACAGGCAAATGGCTTCTCTCCAGTATGTCTCCTCAGGTGAGCTTTAAGATGGCTACTCTTGGTGTACATCTTGGCACAGCCTGGAAAGTTGCACTTGTGCATTTTGATGAGATCTGCCACTGGATTCTTCTGGAACTTCTGTGCTCCTCCGACTAGGAGACCAGCTTGGAACCCACCCACACCAAGACCATCCCCTCCACTACCCACAGGTTTTGCTGCGATGGGCACAGGTGCTATCCGCACAAATTTAGATGTGCCACTGAGCCTGGTAGATGGTGAAGATGAATTGGGGGTAGAAGGTAGAAACTGAGGGACTAATGCAAAGGTCTGTCCCTGGATGTTAACCAGCAGTTGGGCAATTTTGATGTCTGTGCCTGGGGCGGGGGGCTGAGTTGTTAAGGGAGGAGTTGCAGCCCCACTGGGGCCCTGATTCTCCTGTTTGATCTGAATTGGTTGGATTTGAAGAATAACAGGCATCCCACTATTATCATTGCTGGCATTTGGGGTAGTGTTGTTCTCAGTGGAGACAGGTCTACTTTGGGTCTCCTTCTTTATTGCATCCTCTGCCTGCATGCTTGGATCTTGATTACTTGGAATACTATCTGTGCTTGTGGTCTCATGATCAACTCTGAAGTTTGATGGAAGCTTAGCCATTGACACCGTTTGATTAGAATGATGCTGAGATCCAATGGTGCTTGTCTCTGGCACCCTAGATGAGATCTCTTCCATGACCACCACTCCTGTCCCCAATCCGAGGTCCAGCTCCAACTCCAATCCAAGGTGTGAGTTCCCCTCATGCTTGAGGGACACCAAACCACTCATGTTTTCTTCTAAGAACTCTTCAATTTCCTCCAGGGTGGGTTGGAAAGGTTCAGCAGGTGCCTCCTCCATGTTTGAGGGGGACCAGATTGGTAAGTCAAAGTTCTCTTCCTTCATGCTGTCTCTTTGTGAGTTCCAGGGGATGCCTGCTAGAGGAGTTGAGGTTACAGTGCTATCCTCGGCATGGTTGCCACCTCCACCACCAAGGGAAGTATGGGATAGCAGGAAGTTGAGGATGCCATCCTGGCTCTCAGTACTTGATGTACTTCCGTAGCTTGAGCTTAGGACTTGGGAATCTGGGGAGGAGCAGGAACGCAGACTCGATGCATCACTGAGGTCGTCTTCTGAGAATGGTGACGGCATCACCTTATAGCTCCCCGAGTCTGATACCATATCTGACAGGTGGTACCCCACAGGTGAGGCAGAGTCTATGCCACTGTAAGAAAGGAAGTTCTCTTCAGCTGACAAGAAATGATCCACCATTCCCTAGATTTTcccttttattaaaatttataaacaaCTCCTGTTTCGGTGAACAGTCAATTCCTCTTCCTCAGGCTACACCGAATTGATGAAGTCCATGTAAAATGAGAATGTTGTTTTTGCTCACAGCAAGAAAGACATACTGTGATTCACACATACACCAAAAGCTCCG

Function

NR:

description
PREDICTED: Krueppel-like factor 15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31994 True 3050 TUCP 0.44 2 14050401 14058445

Neighbor

gene id symbol gene type direction distance location
cfap100 cfap100 coding downstream 6076 14030764 ~ 14044325 (-)
LOC113533843 NA coding downstream 307841 13738543 ~ 13742560 (-)
acvr1bb acvr1bb,LOC108271957,LOC108427611,LOC107690814,LOC105017213,LOC107686786,LOC106583225 coding downstream 323327 13707454 ~ 13727074 (-)
rplp2 NA coding downstream 420855 13626968 ~ 13629546 (-)
ngfb ngf,ngfb,LOC103031633 coding downstream 506267 13532981 ~ 13544134 (-)
LOC113531636 chst13,LOC106565240,LOC104944027 coding upstream 71396 14129841 ~ 14147849 (-)
txnrd3 txnrd3,LOC105934676 coding upstream 99939 14158384 ~ 14172056 (-)
plxna1b plxna1 coding upstream 219604 14278049 ~ 14457232 (-)
trnae-cuc_5 NA coding upstream 333835 14392280 ~ 14392351 (-)
chchd6b chchd6 coding upstream 437775 14496220 ~ 14541322 (-)
G27105 zxdc non-coding downstream 21517 14027302 ~ 14028884 (-)
G27043 NA non-coding downstream 213919 13835830 ~ 13836482 (-)
G27016 NA non-coding downstream 259035 13788793 ~ 13791366 (-)
G26970 NA non-coding downstream 355581 13647447 ~ 13694820 (-)
G26985 LOC108271615 non-coding downstream 364619 13684123 ~ 13685782 (-)
LOC117599875 NA non-coding upstream 5511 14063956 ~ 14099689 (-)
G27168 NA non-coding upstream 98493 14156938 ~ 14158099 (-)
G27169 NA non-coding upstream 114227 14172672 ~ 14172921 (-)
LOC117596067 NA non-coding upstream 180350 14238795 ~ 14251264 (-)
G27254 NA non-coding upstream 296396 14354841 ~ 14401429 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 143212 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 403224 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 415657 13632262 ~ 13634744 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 548231 13493512 ~ 13502170 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 2286266 11686745 ~ 11764135 (-)
pxmp4 pxmp4,LOC103464829 other upstream 814503 14872948 ~ 14875990 (-)
G27843 NA other upstream 1238864 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 1398190 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 1403505 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 2067385 16125830 ~ 16135715 (-)

Expression


Co-expression Network