G27259


Basic Information

Item Value
gene id G27259
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14444626 ~ 14454291 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU32157
GGCAAGTAAAAACTCCAGTCCTATGTTTTGGTTGCCGCAAAACCTAATTGacaaggctttaaaaaaaaaaaatcaacgtaagttttttgttgtatttaatcATTCTAAACCAACAGAAAAATAGTTTTCTCACTTCACTGTAGTCACCTTCGAAACAAGCTGTGAAATATATTCTGAGAAGTGTATATCTACCACTGCACTTTTACAAACAAATGGAAAGTTATATGATGCAGAATCATTTGATTTAATGCACAAGGGGAAATGAATTGATTTTAGCTCAATGTTGAATaagctactttaaaaaaatgtccttaGCTTAGCTACAAGTAAGTACGAAAATACAGAGAGCTAGAAAATCTCTATAAAAGGCAAATGGAGCTTCCCCGGATATGGTGGTGGTGATTCAGCTGACCTGCACCTGGTTAACCTGGTTAGGATAGGATGattataatttgcatttatgtCACAGAGTCCAAAAAAATACTAATTGCTAGTCCAGAATTTCTGCTTTTTCCAGTCCATTCTCTGAGAAAGTTGACTCATTGTCTGGTCGAAAGTTGACTCATTAGTCAGCCATGCTTCCAAACAACCATCCACCAAGAAATTATACAACTTGCCAACTAAAAATATGCATtgtgtatattaataaaaataaatattgtacaaTGCTGTGATGCAGATACtctgatgatttaaaaatatagcaGTGTTTCCACCTGATTACTGGGAAATGTACTTGATGTAGTTACTTTGCTATTTGTAGACATAATGCTGCCTTCATGTGCTGTTGGAATTATTCTACTTCCCACTTCCACTCATaggctgtttctttttttcttttacttttattttgacaccataacacacattactcagttagctagcttgctgacGATAAGGGAATTTTGGTCAAATGCAAGCTATTTTCacagtgtaaaaatgtacaacgTGCACAGAATTGTAGCTGATgtacataaatgaatatgacCAAAATGGTAAGCGTTAACAATTAGCTGCAttgagaaaaatgaacaaaacctaTCATTCAGTACAGAAACTGTACCCTCCTCCTCCCCATCTCGGAAACTCGGTATCAAAATGACCTCCGAGTTTCccagtcgtaattacgacttgaGGGGTCATTCCTGTGGAACTTCCTAGTGGGAAACACGTATTTACGATAATTCGAtagcacgtgaaggcagcataaTTCTTAAATTGTATTGACCAGTTAGCTAGCTGTAGCAGAGCTCGCCAACACTGCAGTTATAATTAGTTAATTGAAGAAGCCAAAAATCATGGTCGTGATCAGAATATGAGTAATTGTGCAGCCCTAGATCTGAGGTTCTGCTGGAGGGCTGGGTAATTAGGTAGTAAGCTAAGAAGGGAAAGGATGAATTTGTTCATCACGTAGTTATAATGGCATTCTGTGATACGCAAATCTGAAAGGTATATTCTTGTTAGCGTCATAACATGAAATTAGCTACAAGATGATTAATAGAATGGGGAAGCTTACTTTTGAATAGCTAACATACCAGGTGAATTCCGAGAAAATAGTATTTCTGTAGTGTTTTTATAAACTACTGCCACCAAATCcacttaaaacatttaaaattctaGCAgttttttttttttttgagctgtgCACGTGTGTGCAATCACTGTCAATATCACCCTGAATGTTGATGCATGCACAGTCTCTAAGTGGCACTGGAATGAGTATATGAGCTCCAGATGCCTTTGTCTCgtcatttatttagtttgtttacCTTGTGTTTGCAGACTAGCATCTTTTCTGCAGTGTGCTTCAAGCTTGCCTCTTCAAAAGCCTTTAAATATtggctagtgtgtgtgtaggaggatAAAGAGTGTATGTGCATGAATGTAGGAGAAGATATATCAGGATAATAATCCAATTTAATCTAGCTGGGAAAatatatgtttacattttttaaatatcgtCCCTAAAGTCAATCTGGTACTCGAATCAAATTCTAGCTACTTACTGTGGACATAATCCGATGTAATCTCAATGCCGTTTGTGTCAGTGACCAGTTTAATCTAAAATTCCTGCCTTTAATGTTATCTAGGTCCAATCTCTAGCTTGTCTTAGGAACAGATTCAttgaggatgagagagagagagagagagagaggagagaggtgTTGGAGGTGCAGAGTCGCTGCCGGCTTTAGAAAGGAGAATCCGAGCGAACGCAAATCCCACTGGAATGCAGTAGCGCCCACGCCAGCGTGGCCGTGCCCCGTGCCCCATCTGCTACGCCTTTGACCCCTCCAAAACCTCAACCTCATCCATCTCTCAGTCTTTCAGCCTGTCTTTCTGGCTGTCTCCTTGTTCTCAGCTCTTTTGTGTCAGTAACTGGCCTGAAGAGTCATTGATGGTGGGGTTTGCCCTCATTGTAAATGACTGGTGAAATGCAGAAGCCATTTTAGTGTAGATTAGCCTTTGGTATGCGTTAAAGAGTCCCCATTATCCAAAGCTAGGAGCTAAAAGCTAATTGCTGTGTCCATGTTTCGCTACGAGGCATAACTTATTTAGCCATGCTAAGTGCTTCTATCTTGTCCTAATCAGCCTTAATCATCAGGATTCCTAATGGTAATTTGCTGGATATAGTATATGATGATTTTTTGGTTCTAATTTGTTCCATTAGGCTTATTTGATGGTTTTGGGCATAATGATCTAGGAAGAGGAATAGTCATCCAcatgtgtgtttctgctgtGTAACTACAGAATGTGGGTATTTAATCAGGAATTTATTCCCCAGTACCTTTTGTGTTTCTAACCCAACTGACGTGTAGCCTATATACAAAAACACTAGTTACATAAAATAGCAGATAAGCAGATAACATGAATGGTGACGAGTTGAGAATCCTTAGTGGCGCTCCACATTGACTAGCACCAGACACTCAGAAGCGAATGAGACGAGTGCTTTTATTTGCTTTGATGCTTCTTTTTCCATTCGCCTTTAAATATGTTTTCGTCGTCGACTTTTTAAGACGAGCCAGTTCGCCAGTTTGCTAAATAGATCAGAGGGTCAGTTTTTTTACATTCCTATTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32157 True 3081 lncRNA 0.38 3 14444626 14454291

Neighbor

gene id symbol gene type direction distance location
trnae-cuc_5 NA coding downstream 52275 14392280 ~ 14392351 (-)
txnrd3 txnrd3,LOC105934676 coding downstream 272570 14158384 ~ 14172056 (-)
LOC113531636 chst13,LOC106565240,LOC104944027 coding downstream 296777 14129841 ~ 14147849 (-)
cfap100 cfap100 coding downstream 400301 14030764 ~ 14044325 (-)
LOC113533843 NA coding downstream 702066 13738543 ~ 13742560 (-)
chchd6b chchd6 coding upstream 41929 14496220 ~ 14541322 (-)
tpra1 tpra1,LOC107666698 coding upstream 90898 14545189 ~ 14554473 (-)
trim107 LOC108271930 coding upstream 103271 14557562 ~ 14560676 (-)
zgc:123305 LOC108271928,LOC107385524 coding upstream 107885 14562176 ~ 14581300 (-)
LOC113529797 LOC108271527,LOC107705866 coding upstream 137114 14591405 ~ 14598546 (-)
G27254 NA non-coding downstream 43197 14354841 ~ 14401429 (-)
LOC117596067 NA non-coding downstream 193362 14238795 ~ 14251264 (-)
G27169 NA non-coding downstream 271705 14172672 ~ 14172921 (-)
G27168 NA non-coding downstream 286527 14156938 ~ 14158099 (-)
LOC117599875 NA non-coding downstream 344937 14063956 ~ 14099689 (-)
G27303 NA non-coding upstream 38346 14492637 ~ 14492839 (-)
G27448 NA non-coding upstream 336140 14790431 ~ 14790641 (-)
G27484 NA non-coding upstream 405714 14860005 ~ 14860246 (-)
G27502 NA non-coding upstream 429964 14884255 ~ 14884487 (-)
G27600 NA non-coding upstream 556034 15010325 ~ 15010661 (-)
G27107 LOC108272123 other downstream 386181 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 537437 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 797449 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 809882 13632262 ~ 13634744 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 942456 13493512 ~ 13502170 (-)
pxmp4 pxmp4,LOC103464829 other upstream 418657 14872948 ~ 14875990 (-)
G27843 NA other upstream 843018 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 1002344 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 1007659 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 1671539 16125830 ~ 16135715 (-)

Expression


Co-expression Network