G27448


Basic Information

Item Value
gene id G27448
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14790431 ~ 14790641 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU32377
TACCAGAAAGCATGCATCCccaaattacattaaaatctaCCATGCACTATGTTTGCGTGTCAATACCCAAAACATCTGTACGCCTACCTGTTTAGGTCCATCAGCATTAAAAGCCCAAATATGCACTGACAAGGCCAACTGTTTATTTCCCTTTCAGTTAGATGGTAAAATGAGTCACTGTTGTTCTATGGGTTGTCTCCCACTAGATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32377 True 211 lncRNA 0.28 1 14790431 14790641

Neighbor

gene id symbol gene type direction distance location
dlgap4b LOC108272050,LOC108427631 coding downstream 88396 14600663 ~ 14702035 (-)
LOC113529797 LOC108271527,LOC107705866 coding downstream 191885 14591405 ~ 14598546 (-)
zgc:123305 LOC108271928,LOC107385524 coding downstream 209131 14562176 ~ 14581300 (-)
trim107 LOC108271930 coding downstream 229755 14557562 ~ 14560676 (-)
tpra1 tpra1,LOC107666698 coding downstream 235958 14545189 ~ 14554473 (-)
vstm2l LOC108271577 coding upstream 6996 14797637 ~ 14814447 (-)
tgm5l LOC108272022 coding upstream 72326 14862967 ~ 14869703 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding upstream 96824 14887465 ~ 15009183 (-)
LOC113535748 rassf1 coding upstream 220186 15010827 ~ 15024533 (-)
zmynd10 zmynd10 coding upstream 234486 15025127 ~ 15032562 (-)
G27303 NA non-coding downstream 297592 14492637 ~ 14492839 (-)
G27259 NA non-coding downstream 336140 14444626 ~ 14454291 (-)
G27254 NA non-coding downstream 389002 14354841 ~ 14401429 (-)
LOC117596067 NA non-coding downstream 539167 14238795 ~ 14251264 (-)
G27169 NA non-coding downstream 617510 14172672 ~ 14172921 (-)
G27484 NA non-coding upstream 69364 14860005 ~ 14860246 (-)
G27502 NA non-coding upstream 93614 14884255 ~ 14884487 (-)
G27600 NA non-coding upstream 219684 15010325 ~ 15010661 (-)
G27652 NA non-coding upstream 274244 15064885 ~ 15065211 (-)
G27699 NA non-coding upstream 339362 15130003 ~ 15130260 (-)
G27107 LOC108272123 other downstream 731986 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 883242 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 1143254 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 1155687 13632262 ~ 13634744 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 1288261 13493512 ~ 13502170 (-)
pxmp4 pxmp4,LOC103464829 other upstream 82307 14872948 ~ 14875990 (-)
G27843 NA other upstream 506668 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 665994 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 671309 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 1335189 16125830 ~ 16135715 (-)

Expression


Co-expression Network