G27502


Basic Information

Item Value
gene id G27502
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14884255 ~ 14884487 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU32441
ctaatggatagagagtcggacttgcaacccgaaggtgaacctgaaggttgtgggttcgagtctcaggtccggcagggattgtaggtggggggagtgaatgaccagcgctctctcccaccctcaataccatgactgaggtgagacccttgagcaaggcaccgaacccccaactgctccccgggcgccgcagcaaaaaaggctgcccactgctccgggtgtgtgttcactactgt

Function

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit rho-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32441 True 233 lncRNA 0.58 1 14884255 14884487

Neighbor

gene id symbol gene type direction distance location
tgm5l LOC108272022 coding downstream 14552 14862967 ~ 14869703 (-)
vstm2l LOC108271577 coding downstream 69808 14797637 ~ 14814447 (-)
dlgap4b LOC108272050,LOC108427631 coding downstream 182220 14600663 ~ 14702035 (-)
LOC113529797 LOC108271527,LOC107705866 coding downstream 285709 14591405 ~ 14598546 (-)
zgc:123305 LOC108271928,LOC107385524 coding downstream 302955 14562176 ~ 14581300 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding upstream 2978 14887465 ~ 15009183 (-)
LOC113535748 rassf1 coding upstream 126340 15010827 ~ 15024533 (-)
zmynd10 zmynd10 coding upstream 140640 15025127 ~ 15032562 (-)
nprl2 nprl2 coding upstream 148959 15033446 ~ 15039603 (-)
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding upstream 392418 15276905 ~ 15278713 (-)
G27484 NA non-coding downstream 24009 14860005 ~ 14860246 (-)
G27448 NA non-coding downstream 93614 14790431 ~ 14790641 (-)
G27303 NA non-coding downstream 391416 14492637 ~ 14492839 (-)
G27259 NA non-coding downstream 429964 14444626 ~ 14454291 (-)
G27254 NA non-coding downstream 482826 14354841 ~ 14401429 (-)
G27600 NA non-coding upstream 125838 15010325 ~ 15010661 (-)
G27652 NA non-coding upstream 180398 15064885 ~ 15065211 (-)
G27699 NA non-coding upstream 245516 15130003 ~ 15130260 (-)
G27705 NA non-coding upstream 260218 15144705 ~ 15146155 (-)
G27706 NA non-coding upstream 266325 15150812 ~ 15151049 (-)
pxmp4 pxmp4,LOC103464829 other downstream 8265 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 825810 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 977066 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 1237078 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 1249511 13632262 ~ 13634744 (-)
G27843 NA other upstream 412822 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 572148 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 577463 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 1241343 16125830 ~ 16135715 (-)
G29158 NA other upstream 2388468 17272955 ~ 17280173 (-)

Expression


Co-expression Network