G27600


Basic Information

Item Value
gene id G27600
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15010325 ~ 15010661 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU32551
CTCTGAACACAGATGCTCCAGTAGATGGCAACAgataactaaactaaaatacaCATAACCTGACACACTTGTTTATTCTCACAGGTCCTGGAATTCACAAGTCTTAGGGCATTCCCAAAagctatttattaatttacagcAAAAGCCACTCCTAAGAGATTCCTAACTGTAGCAGTAACctgtaaatatttgttttgctcttttggCTTTATTGTGTTTGTATATTAGCTAGACAGAGGTGCTGTATGTAGCATGTAGTTTGTGGATATGAAATTGCTGGAAAGACTTGAAACAGACTGAGTAAATGTTTGACCAGGTGAAGTAGCAGCaaaacagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32551 True 337 lncRNA 0.38 1 15010325 15010661

Neighbor

gene id symbol gene type direction distance location
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding downstream 1142 14887465 ~ 15009183 (-)
tgm5l LOC108272022 coding downstream 140622 14862967 ~ 14869703 (-)
vstm2l LOC108271577 coding downstream 195878 14797637 ~ 14814447 (-)
dlgap4b LOC108272050,LOC108427631 coding downstream 308290 14600663 ~ 14702035 (-)
LOC113529797 LOC108271527,LOC107705866 coding downstream 411779 14591405 ~ 14598546 (-)
LOC113535748 rassf1 coding upstream 166 15010827 ~ 15024533 (-)
zmynd10 zmynd10 coding upstream 14466 15025127 ~ 15032562 (-)
nprl2 nprl2 coding upstream 22785 15033446 ~ 15039603 (-)
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding upstream 266244 15276905 ~ 15278713 (-)
rad18 rad18 coding upstream 494983 15505644 ~ 15568428 (-)
G27502 NA non-coding downstream 125838 14884255 ~ 14884487 (-)
G27484 NA non-coding downstream 150079 14860005 ~ 14860246 (-)
G27448 NA non-coding downstream 219684 14790431 ~ 14790641 (-)
G27303 NA non-coding downstream 517486 14492637 ~ 14492839 (-)
G27259 NA non-coding downstream 556034 14444626 ~ 14454291 (-)
G27652 NA non-coding upstream 54224 15064885 ~ 15065211 (-)
G27699 NA non-coding upstream 119342 15130003 ~ 15130260 (-)
G27705 NA non-coding upstream 134044 15144705 ~ 15146155 (-)
G27706 NA non-coding upstream 140151 15150812 ~ 15151049 (-)
G27801 sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934 non-coding upstream 233654 15244315 ~ 15246353 (-)
pxmp4 pxmp4,LOC103464829 other downstream 134335 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 951880 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 1103136 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 1363148 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 1375581 13632262 ~ 13634744 (-)
G27843 NA other upstream 286648 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 445974 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 451289 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 1115169 16125830 ~ 16135715 (-)
G29158 NA other upstream 2262294 17272955 ~ 17280173 (-)

Expression


Co-expression Network