G27652


Basic Information

Item Value
gene id G27652
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15064885 ~ 15065211 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU32615
GACAGATTGAAGGCGGGAGCGGAAAAGCTTCAGTCCGTCGTCAGGCAGGAGAAGGAggttgtgctctctctctctctctctctctctctctctttctctctctctcagctatTCCTCTGCTTTTCCCTCGGTTTCCGGAGCATCGCCTCCTCCACGGCATGCTCGAGCGCATAAACTGCTGCCTCTGACTCGCTGCTCCATCCGGACTTGATTCTCATAAGCGCTGATCCTCAACAAGTAGTTTGCGATCCGAATCCCATCCTGCGCGAGCTCTTTTCCCACCTGCTAATCAAGACTGCGCGCGCGTGACGCCAGCAGCTTCCGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32615 True 327 lncRNA 0.56 1 15064885 15065211

Neighbor

gene id symbol gene type direction distance location
nprl2 nprl2 coding downstream 25282 15033446 ~ 15039603 (-)
zmynd10 zmynd10 coding downstream 32323 15025127 ~ 15032562 (-)
LOC113535748 rassf1 coding downstream 40352 15010827 ~ 15024533 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding downstream 55702 14887465 ~ 15009183 (-)
tgm5l LOC108272022 coding downstream 195182 14862967 ~ 14869703 (-)
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding upstream 211694 15276905 ~ 15278713 (-)
rad18 rad18 coding upstream 440433 15505644 ~ 15568428 (-)
srgap3 srgap3,LOC107750258,LOC107657972 coding upstream 553140 15618351 ~ 15727114 (-)
cish LOC108272001 coding upstream 687002 15752213 ~ 15756341 (-)
LOC113530515 wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800 coding upstream 697325 15762536 ~ 15775878 (-)
G27600 NA non-coding downstream 54224 15010325 ~ 15010661 (-)
G27502 NA non-coding downstream 180398 14884255 ~ 14884487 (-)
G27484 NA non-coding downstream 204639 14860005 ~ 14860246 (-)
G27448 NA non-coding downstream 274244 14790431 ~ 14790641 (-)
G27303 NA non-coding downstream 572046 14492637 ~ 14492839 (-)
G27699 NA non-coding upstream 64792 15130003 ~ 15130260 (-)
G27705 NA non-coding upstream 79494 15144705 ~ 15146155 (-)
G27706 NA non-coding upstream 85601 15150812 ~ 15151049 (-)
G27801 sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934 non-coding upstream 179104 15244315 ~ 15246353 (-)
G27904 LOC108271919 non-coding upstream 317703 15382914 ~ 15384090 (-)
pxmp4 pxmp4,LOC103464829 other downstream 188895 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1006440 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 1157696 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 1417708 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 1430141 13632262 ~ 13634744 (-)
G27843 NA other upstream 232098 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 391424 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 396739 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 1060619 16125830 ~ 16135715 (-)
G29158 NA other upstream 2207744 17272955 ~ 17280173 (-)

Expression


Co-expression Network