G27801 (sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934)


Basic Information

Item Value
gene id G27801
gene name sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15244315 ~ 15246353 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU32777
atttcatatacattgataaaatatttcatatcaaCATATTGTAACTTCAACATGTAAACTGTGTAAAATTtctatttgtctttttattgaAATACCAGTTTCCATTGATTATAGtagtgttttttctctttcttctcaaACGAGTCAGAATGTGAAGGGAGGCAGACACTGCTGTGTGCATGAAACAATTCTCCAAAATATAGACAGAATACTcacttacaaataaaatggtttaaaaaaaaaaaaaaagccctcagACTTCAGTCACACAAACCAACCAAGTGAACCAAATGAAATGCATCCATACTACATAACCTAACAATCAATAAATGTTGGCCCTAAATGCTAAAATGAGCAAGATTTGGCGACCTCTTCCTTACAAATCCATACAGTCTTTAGCTGAATAACTAGTTGTATGTTCTTCTGTTCttggtaaacacacactgctctcctAGTTCAAACGTTTTgtcaaaaaagtttttatttacatCAGATCAATTAACAGTCTCCATGACATGACACTGCAGTTATCTGATCACACATACACTGGCACTGGTTTAAATCTTGGGTTGGAGAAACCAACATATGCTGCACATGTCTGAGTCACTGGGTTTGGCCATTTTCACAACATTTACCATCTGTGCTTTTAACCATTAGTAACTTGATTAAAAATGCAGCAGGTGGTGTATTGGCTGACTAGATGGAGAGAAATGGCTGTCCCACAAGAAAGACAGGGACACAGACATTcccaggatgaattctgagaGGGCTTTTGGAAAAAGAAGCACAAATGCCTTAGAGTGGCAGAGCACTGATTGTGTCCATATGataaaacaataattatataaaaagaaCTGAATAACAAACGGAAATCTGTCAGTCCAAGGTGCCTGTGGAgggcttttttgttgttgtttagaaGAGCAGAGCACCCATACTGCCGACTTCACTTTGTTCCTTTACAAAGATCTCAAAGTATTGGTAGATGATGGTGACGGCCAGCAAGATTCCTGTTCCTGAGCCAATGGCACCCAGGAAATCAGCCATGACAGAGAGGCCACCTATGCATAGTCCTCCAAAAGCTGCAGCTGTGGGGATGTACCTGAGTTCATGCACCATGgatgtgtctctgtgtcccCTCATCACCATCTGCTGTTCTTTAAGCTGTTTTGCAACCTAGGATAGAGAATTCCAGAGCTGTACATTATTACTCTATTCAACACAGAGCAATGTGGTATTGTACATCATAAATGACCTGAAAAATTCAAAGAAATACACTCACATCTTTGGCAGAAGATCCAGACACCTCAATCCATGTCTTTGAGAAGAAAGCACAGGAGCCCAGCATGAAGACGATATAGATGACAGCATGGACTGGATCATCTAAGACTGAGCCAAAGGACTCAGGAGGGGAGAGGTAATAACACAGACCGCCTACAGGGTAAGCACGAGCTGGCCCTCCAGTCGAGGTGTCCTGTTAACACATACATATACCATGTGAATCTCATGAATGtgcttcaaacacacacatttttgataAAATGATCTGTTTCATGCAGAAAACAAGCATGCACCTTCCTGTGGTGAAATGTTATCAAGACACTGCTAGGATAGTATCCTGATAAATTTTTACCACTTGTAATCAAACACGTCTCTGTTTAGCCAGATTGTATCTGATCGCTGTATCATGCAAATAACCCTATAACACTTAAACAACAATCTGTTTGTTCTGTGCATGATTTCGCATGGCATAATTTTTCCTTTAGTGCAAAGGAAGGTACCAATTTTTGACAGCTGATCTTAAAAGATGTCAGCTGTTTATGTTGTTTAATATTAAAGGGACCTTGGTTCCAGTGGTTTCACAGAACGATTCCGATTCAAGAATGAAGTGAATACATGTGAGAAAGAGTGTATAGCGCTA

Function

symbol description
sec61a1 Predicted to enable protein transmembrane transporter activity; ribosome binding activity; and signal sequence binding activity. Involved in pronephric nephron development. Acts upstream of or within habenula development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of Sec61 translocon complex. Is expressed in several structures, including axis; digestive system; hatching gland; midbrain hindbrain boundary; and polster. Human ortholog(s) of this gene implicated in familial juvenile hyperuricemic nephropathy. Orthologous to human SEC61A1 (SEC61 translocon subunit alpha 1).

NR:

description
protein transport protein Sec61 subunit alpha-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32777 True 1921 lncRNA 0.39 2 15244315 15246353

Neighbor

gene id symbol gene type direction distance location
nprl2 nprl2 coding downstream 204712 15033446 ~ 15039603 (-)
zmynd10 zmynd10 coding downstream 211753 15025127 ~ 15032562 (-)
LOC113535748 rassf1 coding downstream 219782 15010827 ~ 15024533 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding downstream 235132 14887465 ~ 15009183 (-)
tgm5l LOC108272022 coding downstream 374612 14862967 ~ 14869703 (-)
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding upstream 30552 15276905 ~ 15278713 (-)
rad18 rad18 coding upstream 259291 15505644 ~ 15568428 (-)
srgap3 srgap3,LOC107750258,LOC107657972 coding upstream 371998 15618351 ~ 15727114 (-)
cish LOC108272001 coding upstream 505860 15752213 ~ 15756341 (-)
LOC113530515 wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800 coding upstream 516183 15762536 ~ 15775878 (-)
G27706 NA non-coding downstream 93266 15150812 ~ 15151049 (-)
G27705 NA non-coding downstream 98160 15144705 ~ 15146155 (-)
G27699 NA non-coding downstream 114055 15130003 ~ 15130260 (-)
G27652 NA non-coding downstream 179104 15064885 ~ 15065211 (-)
G27600 NA non-coding downstream 233654 15010325 ~ 15010661 (-)
G27904 LOC108271919 non-coding upstream 136561 15382914 ~ 15384090 (-)
G27932 NA non-coding upstream 225988 15472341 ~ 15472547 (-)
G27935 NA non-coding upstream 231437 15477790 ~ 15478008 (-)
G27953 NA non-coding upstream 257479 15503832 ~ 15504043 (-)
G28173 NA non-coding upstream 368672 15615025 ~ 15616748 (-)
pxmp4 pxmp4,LOC103464829 other downstream 368325 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1185870 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 1337126 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 1597138 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 1609571 13632262 ~ 13634744 (-)
G27843 NA other upstream 50956 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 210282 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 215597 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 879477 16125830 ~ 16135715 (-)
G29158 NA other upstream 2026602 17272955 ~ 17280173 (-)

Expression


Co-expression Network