G27925 (cav3,LOC107749619,LOC107584510,LOC107577493)


Basic Information

Item Value
gene id G27925
gene name cav3,LOC107749619,LOC107584510,LOC107577493
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15456635 ~ 15461001 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU32916
TTGATTTTCtaagatatatttattttgtgtacGGTCCAAATCACACATATGTGATAAATCAAGACATCTAGATTTTATCTAATTTATAAAGGCAAGAACATGAGTATCACTGTATCATTCCACAAGAAATTTCATCttcttaaatttcttttttgacATTACAGGAATACAGTAAAGTAATAAACTTGTACccaataataatgtttaattagcaCACAGAGAGAAGGCCTTATCACATAAAAGCATAAGACTTGTCAtctgctgtcaactctcaaatACTCTTCAACATAAATATTTCTCTGAACAGGTGAGTAAGTCAAGGTGAACTGCATAAATACCTCTGATCACACCTCAAGAAATGTCTAGGCAGCAGCATTCAGTCACCATTACGTACATCTACCTACATCTACCTAGTTTTCATTCATGTAAAGACAGTGGGGCTGAGGCCTAAGCCCATCAAGGTCTGACctcttttataaaaataaaacaaaaccaaaaggaCACCAATTTCCCTGGCAGACATTGTGAACATTGTTTTTGTGACCTCTACACCTCCTTGCGAAGCGCCACTCGTATGCTGCTGAATACTTTCCCCAGTGCCTCGAAGAAGGGGTCGCAGAATGTATGGATGCAGAGGGAGTAGATTCGACTCAGGCACTGGGTTTCAATCAGGTAGCTCTTGATGCAGGGCATGACGGCCCAGATGTGGCAAAAAGAGATGCAGGCAAAGCAGAATCCCCACAGCAGCGCAACTGGGATACCAAAGATGGCAGACAGTATGCGGTAGCACCAGTACTTGGAGATGGTGAAGGTGGTGTAGCTGGCTTTCCACACTCCATCCATACTGTGTGTGCCATCAGGCTCGGCAATCACATCCTCAAAATTACCTTCACGACATCCTCATTAATTTGCTTGGGGTCCCTGTTGATCAAGTCAATCTCTTTGGTATGACTGTCCTTTAGGATCTTCTCCTCACTGATGTTGTACTGGTTTGCCATGGCGGTAGCCTCGGGCCCTGCACTGGCCGGAATGGGAGCAGAGTTGAGCCAGGGAAGGGTGCGAATAAAGGGGATTTGATGCCCTTGCAAGCGAGCAGCTAaacagaaagagtgtgtgaacagTTGCCTCTGAACCTCACTCGCTGATCTGAGGACACGCCTGGAATGTTAGAGGACAGCTGCACTAGACTAGCCTCTACTCTATAATGGGTTCCTGTCTTTCACTGCCTCCCTCActcgctttctctctcaatTCCCTTACTTTACCTTGTGCCACACATCAT

Function

symbol description
cav3 Predicted to enable connexin binding activity; molecular adaptor activity; and transmembrane transporter binding activity. Acts upstream of or within muscle cell fate commitment; notochord cell development; and striated muscle cell differentiation. Located in sarcolemma. Is expressed in several structures, including adaxial cell; heart; musculature system; notochord; and pectoral fin. Used to study muscular dystrophy. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple); isolated elevated serum creatine phosphokinase levels; and muscle tissue disease (multiple). Orthologous to human CAV3 (caveolin 3).

NR:

description
PREDICTED: retinaldehyde-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32916 True 1282 TUCP 0.44 2 15456635 15461001

Neighbor

gene id symbol gene type direction distance location
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding downstream 177922 15276905 ~ 15278713 (-)
nprl2 nprl2 coding downstream 417032 15033446 ~ 15039603 (-)
zmynd10 zmynd10 coding downstream 424073 15025127 ~ 15032562 (-)
LOC113535748 rassf1 coding downstream 432102 15010827 ~ 15024533 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding downstream 447452 14887465 ~ 15009183 (-)
rad18 rad18 coding upstream 44643 15505644 ~ 15568428 (-)
srgap3 srgap3,LOC107750258,LOC107657972 coding upstream 157350 15618351 ~ 15727114 (-)
cish LOC108272001 coding upstream 291212 15752213 ~ 15756341 (-)
LOC113530515 wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800 coding upstream 301535 15762536 ~ 15775878 (-)
wdr82 wdr82,swd2,LOC106565976 coding upstream 317189 15778190 ~ 15784244 (-)
G27904 LOC108271919 non-coding downstream 72545 15382914 ~ 15384090 (-)
G27801 sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934 non-coding downstream 210282 15244315 ~ 15246353 (-)
G27706 NA non-coding downstream 305586 15150812 ~ 15151049 (-)
G27705 NA non-coding downstream 310480 15144705 ~ 15146155 (-)
G27699 NA non-coding downstream 326375 15130003 ~ 15130260 (-)
G27932 NA non-coding upstream 11340 15472341 ~ 15472547 (-)
G27935 NA non-coding upstream 16789 15477790 ~ 15478008 (-)
G27953 NA non-coding upstream 42831 15503832 ~ 15504043 (-)
G28173 NA non-coding upstream 154024 15615025 ~ 15616748 (-)
G28182 NA non-coding upstream 220569 15681570 ~ 15682044 (-)
G27843 NA other downstream 157616 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 580645 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1398190 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 1549446 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 1809458 13640381 ~ 13647177 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 949 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 664829 16125830 ~ 16135715 (-)
G29158 NA other upstream 1811954 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 2011329 17472330 ~ 17529315 (-)
G29263 NA other upstream 2488156 17949157 ~ 17949718 (-)

Expression


Co-expression Network