oxtr (oxtr,LOC107584509,LOC107673460,LOC107658098)


Basic Information

Item Value
gene id oxtr
gene name oxtr,LOC107584509,LOC107673460,LOC107658098
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15461950 ~ 15495209 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU32920
AGATTTTGTGCAGCCGTGGGGTGCCAAAGCCTACATCACTTGGATCAGCCTCACGGTCTACATCATTCCTGTGGCTATCTTGAGCATTTGTTACGGTCTCATAAGCTTTAAGATCTGGCAGAACTTTAAGCTGAAGACCAGGCGCGAGCAGCAGGTCGTCACTCTGAGTCCCACAGCCGCGCGAAACGGTGCGCTTTTGGCGCGCGTCAGCAGCGTCAGGCTCATCTCCAAGGCCAAGATCACCACGGTCAAAATGACGTTCGTCATCGTGCTGGCTTACATCGTGTGCTGGACTCCGTTCTTCTTCGTGCAGATGTGGTCGGCGTGGGATCCAGCTGCGCCCCGGGAGGCAATGCCCTTCATCATCTCCATGCTGCTGGCCAGTTTGAACAGCTGTTGTAACCCCTGGATCTACATGTGCTTTGCTGGACACCTGTTCCATGACCTGAAGCAGAACTTTCTGTGCTGCCCGGCACACTACCTGAAGTCCTCTCAGTGCCGCTGTGATCTGGAGCACAACTCGAGCCGCAAGAGCAACTCCTCCACTTATGTCATGAAGAGCACCAGCAGCCAGAGAAGCATTACCCAGACATCGTCCACATAGACACTGATACTTATCACACATGAGGACCAGGCATAGACCCATACAGAATGGAACAGTGATGTGCACAGATGGTTGTAAGCACATTGAGAGGAGCCTAATCAAACTCATTATCAGGACACTGGTGGAAGTTTTGGCTCCATCGCTGTGATTACTTCCtggactgcaaaaaaaaaaaaaaaaaaagactaccaTCAGAGGAAAGGGTGACTGTAATGTCATAGCAGATGGCATGTTACCATACATGCAGCCAAGAAAATGTCTGGCTCCAGATTAAAATCTGTTTGGCTTCCAGTAGAGAGgtcttttttaaaacctttgacTTGTTTTTTCTGATTCTAACTTAAATATGCTATTCAGTCAGTATTGCCACTCATCAACATTCCAttcattctcagaaaaaaaaagaaataaactatTTCATAGCTTTTCTTGTTACTTAAAGTCATATCTTGTGAAAACTGCATGTATTTTGTGGATTTACTAACATATTCTAAGATCAAGTCAGTAATGAGGACTAGACTCCATGTTTCAGTATCAGCTTGACAACAGTAACGCCTGTAGTAACAATTCAtggttttttcttcatttttttcaacagacatagttctgttttgtttgcttttttattatCAAGGAGCTCTTTAAGAGCTCAGCATTACTTTcccttttcttcctcatgaGTTATTCTTTGGTTTTATTCACCCAACAGTATCTTCTTGATCAGTTTCTATAGCCATtgctatttattttacagccaCATACTTTGTCATACTCATTTGCAGAGAATatgtaatcacacacttctgtgATGTTAACAGAAAGTGTGACCCCTGTGAGATAACTCTGTTTTATTGAAGTAAAATTCTGAATGTTTCCctaaaaaaagatatttgagGGCAGGTCAGCTAGTGTGCTTGTCCAACAACACAGAAATCTGGCATCATTTTTCTCACTTGCTGCATGCTGTAAGAAAGGAATGTCCTaatgtctcatttttttaaatccagcagTAAAATGATTGTTCAATGATTATACTTCTTTCAAAGTGTTTAATTCTATTCTTTACAGACACTTTTTTCTCAGTCAAAAGGCTACTGAATTTAACTTCTGAAAAGCAGTCATATTTACTATTAATATAAGTCAGAATATGGAg
>XM_026919171.2
CAAGGACTTTCCTCTCATACTAACGTCACTTGTAGGACCGGCTGCAAAATGCACAAGCGCTTTCACCTGTGTGGTTGAGACATGTCGTATCCTCAGCATGCCTGAAGAAATCGTGTGCTCCACCTAGGATAAAGCGGCACGCGCTGTGGAGAAGTTCCCGTGCATCCAGACGCGGCGGTACCATGGAGGAAACACTTAAAGAGCAGGACATCTGGGCTCTCAACGACTCGTGGAGAAATGACAGCTTCGGCAACGACACGGATAGTGCCAATCAAACGGTGAATCCCCTGAAGCGCAATGAGGAGGTGGCCAAAGTGGAGGTGACGGTGCTGGCCCTGGTCTTGTTCTTCGCCCTCGCCGGGAACCTGTGCGTGCTGCTCGCCATCCACACGGCCAAGCACGGCCAGTCGCGCATGTACTACTTCATGAAGCACCTGAGCATCGCCGACCTGGTGGTGGCCATCTTCCAGGTGCTGCCCCAGCTCATCTGGGACATCACATTCCGCTTCTATGGGCCCGATTTGCTGTGCAGGCTTGTGAAGTACCTCCAAATAGTCGGCATGTTCGCCTCCACCTACATGCTCGTGCTGATGTCCATAGATAGGTGCCTGGCCATCTGCCAGCCGCTGCGCTCCCTGCACAAACGGAAAGACCGCTGCTACGTGGTGTTGTCCTGGGTGCTCAGCTTGCTCTTCAGCATCCCGCAGGTGTACATCTTCTCTCTCCGGGAGGTCGGATCTGGAGTGTACGACTGCTGGGGAGATTTTGTGCAGCCGTGGGGTGCCAAAGCCTACATCACTTGGATCAGCCTCACGGTCTACATCATTCCTGTGGCTATCTTGAGCATTTGTTACGGTCTCATAAGCTTTAAGATCTGGCAGAACTTTAAGCTGAAGACCAGGCGCGAGCAGCAGGTCGTCACTCTGAGTCCCACAGCCGCGCGAAACGGTGCGCTTTTGGCGCGCGTCAGCAGCGTCAGGCTCATCTCCAAGGCCAAGATCACCACGGTCAAAATGACGTTCGTCATCGTGCTGGCTTACATCGTGTGCTGGACTCCGTTCTTCTTCGTGCAGATGTGGTCGGCGTGGGATCCAGCTGCGCCCCGGGAGGCAATGCCCTTCATCATCTCCATGCTGCTGGCCAGTTTGAACAGCTGTTGTAACCCCTGGATCTACATGTGCTTTGCTGGACACCTGTTCCATGACCTGAAGCAGAACTTTCTGTGCTGCCCGGCACACTACCTGAAGTCCTCTCAGTGCCGCTGTGATCTGGAGCACAACTCGAGCCGCAAGAGCAACTCCTCCACTTATGTCATGAAGAGCACCAGCAGCCAGAGAAGCATTACCCAGACATCGTCCACATAGACACTGATACTTATCACACATGAGGACCAGGCATAGACCCATACAGAATGGAACAGTGATGTGCACAGATGGTTGTAAGCACATTGAGAGGAGCCTAATCAAACTCATTATCAGGACACTGGTGGAAGTTTTGGCTCCATCGCTGTGATTACTTCCtggactgcaaaaaaaaaaaaaaaaaaagactaccaTCAGAGGAAAGGGTGACTGTAATGTCATAGCAGATGGCATGTTACCATACATGCAGCCAAGAAAATGTCTGGCTCCAGATTAAAATCTGTTTGGCTTCCAGTAGAGAGgtcttttttaaaacctttgacTTGTTTTTTCTGATTCTAACTTAAATATGCTATTCAGTCAGTATTGCCACTCATCAACATTCCAttcattctcagaaaaaaaaagaaataaactatTTCATAGCTTTTCTTGTTACTTAAAGTCATATCTTGTGAAAACTGCATGTATTTTGTGGATTTACTAACATATTCTAAGATCAAGTCAGTAATGAGGACTAGACTCCATGTTTCAGTATCAGCTTGACAACAGTAACGCCTGTAGTAACAATTCAtggttttttcttcatttttttcaacagacatagttctgttttgtttgcttttttattatCAAGGAGCTCTTTAAGAGCTCAGCATTACTTTcccttttcttcctcatgaGTTATTCTTTGGTTTTATTCACCCAACAGTATCTTCTTGATCAGTTTCTATAGCCATtgctatttattttacagccaCATACTTTGTCATACTCATTTGCAGAGAATatgtaatcacacacttctgtgATGTTAACAGAAAGTGTGACCCCTGTGAGATAACTCTGTTTTATTGAAGTAAAATTCTGAATGTTTCCctaaaaaaagatatttgagGGCAGGTCAGCTAGTGTGCTTGTCCAACAACACAGAAATCTGGCATCATTTTTCTCACTTGCTGCATGCTGTAAGAAAGGAATGTCCTaatgtctcatttttttaaatccagcagTAAAATGATTGTTCAATGAT
>XM_026919181.2
CCAGGCTTCTCTTCAAGGACTTTCCTCTCATACTAACGTCACTTGTAGGACCGGCTGCAAAATGCACAAGCGCTGATAAAGCGGCACGCGCTGTGGAGAAGTTCCCGTGCATCCAGACGCGGCGGTACCATGGAGGAAACACTTAAAGAGCAGGACATCTGGGCTCTCAACGACTCGTGGAGAAATGACAGCTTCGGCAACGACACGGATAGTGCCAATCAAACGGTGAATCCCCTGAAGCGCAATGAGGAGGTGGCCAAAGTGGAGGTGACGGTGCTGGCCCTGGTCTTGTTCTTCGCCCTCGCCGGGAACCTGTGCGTGCTGCTCGCCATCCACACGGCCAAGCACGGCCAGTCGCGCATGTACTACTTCATGAAGCACCTGAGCATCGCCGACCTGGTGGTGGCCATCTTCCAGGTGCTGCCCCAGCTCATCTGGGACATCACATTCCGCTTCTATGGGCCCGATTTGCTGTGCAGGCTTGTGAAGTACCTCCAAATAGTCGGCATGTTCGCCTCCACCTACATGCTCGTGCTGATGTCCATAGATAGGTGCCTGGCCATCTGCCAGCCGCTGCGCTCCCTGCACAAACGGAAAGACCGCTGCTACGTGGTGTTGTCCTGGGTGCTCAGCTTGCTCTTCAGCATCCCGCAGGTGTACATCTTCTCTCTCCGGGAGGTCGGATCTGGAGTGTACGACTGCTGGGGAGATTTTGTGCAGCCGTGGGGTGCCAAAGCCTACATCACTTGGATCAGCCTCACGGTCTACATCATTCCTGTGGCTATCTTGAGCATTTGTTACGGTCTCATAAGCTTTAAGATCTGGCAGAACTTTAAGCTGAAGACCAGGCGCGAGCAGCAGGTCGTCACTCTGAGTCCCACAGCCGCGCGAAACGGTGCGCTTTTGGCGCGCGTCAGCAGCGTCAGGCTCATCTCCAAGGCCAAGATCACCACGGTCAAAATGACGTTCGTCATCGTGCTGGCTTACATCGTGTGCTGGACTCCGTTCTTCTTCGTGCAGATGTGGTCGGCGTGGGATCCAGCTGCGCCCCGGGAGGCAATGCCCTTCATCATCTCCATGCTGCTGGCCAGTTTGAACAGCTGTTGTAACCCCTGGATCTACATGTGCTTTGCTGGACACCTGTTCCATGACCTGAAGCAGAACTTTCTGTGCTGCCCGGCACACTACCTGAAGTCCTCTCAGTGCCGCTGTGATCTGGAGCACAACTCGAGCCGCAAGAGCAACTCCTCCACTTATGTCATGAAGAGCACCAGCAGCCAGAGAAGCATTACCCAGACATCGTCCACATAGACACTGATACTTATCACACATGAGGACCAGGCATAGACCCATACAGAATGGAACAGTGATGTGCACAGATGGTTGTAAGCACATTGAGAGGAGCCTAATCAAACTCATTATCAGGACACTGGTGGAAGTTTTGGCTCCATCGCTGTGATTACTTCCtggactgcaaaaaaaaaaaaaaaaaaagactaccaTCAGAGGAAAGGGTGACTGTAATGTCATAGCAGATGGCATGTTACCATACATGCAGCCAAGAAAATGTCTGGCTCCAGATTAAAATCTGTTTGGCTTCCAGTAGAGAGgtcttttttaaaacctttgacTTGTTTTTTCTGATTCTAACTTAAATATGCTATTCAGTCAGTATTGCCACTCATCAACATTCCAttcattctcagaaaaaaaaagaaataaactatTTCATAGCTTTTCTTGTTACTTAAAGTCATATCTTGTGAAAACTGCATGTATTTTGTGGATTTACTAACATATTCTAAGATCAAGTCAGTAATGAGGACTAGACTCCATGTTTCAGTATCAGCTTGACAACAGTAACGCCTGTAGTAACAATTCAtggttttttcttcatttttttcaacagacatagttctgttttgtttgcttttttattatCAAGGAGCTCTTTAAGAGCTCAGCATTACTTTcccttttcttcctcatgaGTTATTCTTTGGTTTTATTCACCCAACAGTATCTTCTTGATCAGTTTCTATAGCCATtgctatttattttacagccaCATACTTTGTCATACTCATTTGCAGAGAATatgtaatcacacacttctgtgATGTTAACAGAAAGTGTGACCCCTGTGAGATAACTCTGTTTTATTGAAGTAAAATTCTGAATGTTTCCctaaaaaaagatatttgagGGCAGGTCAGCTAGTGTGCTTGTCCAACAACACAGAAATCTGGCATCATTTTTCTCACTTGCTGCATGCTGTAAGAAAGGAATGTCCTaatgtctcatttttttaaatccagcagTAAAATGATTGTTCAATGAT
>XM_034314036.1
AAGCTCATCTGTGCTGAAATTTCTCACTAACACTTTCTGGAGGGTTACTCAATTTTGCCATGAACTGCAAAGAAGCCTGAGTCTGTAATCTCTTGCCTGTGTCTGTCTTAACTCCCAGTGAGCAAGCCAAGGATGACAGCAGCAAGGAAAAAGCTCCTTAAGGTGgaagtgaaaaggaagaaacCTTGTCATAAACCAGTTCTCTGCAGTTCACCTGTGTGGTTGAGACATGTCGTATCCTCAGCATGCCTGAAGAAATCGTGTGCTCCACCTAGGATAAAGCGGCACGCGCTGTGGAGAAGTTCCCGTGCATCCAGACGCGGCGGTACCATGGAGGAAACACTTAAAGAGCAGGACATCTGGGCTCTCAACGACTCGTGGAGAAATGACAGCTTCGGCAACGACACGGATAGTGCCAATCAAACGGTGAATCCCCTGAAGCGCAATGAGGAGGTGGCCAAAGTGGAGGTGACGGTGCTGGCCCTGGTCTTGTTCTTCGCCCTCGCCGGGAACCTGTGCGTGCTGCTCGCCATCCACACGGCCAAGCACGGCCAGTCGCGCATGTACTACTTCATGAAGCACCTGAGCATCGCCGACCTGGTGGTGGCCATCTTCCAGGTGCTGCCCCAGCTCATCTGGGACATCACATTCCGCTTCTATGGGCCCGATTTGCTGTGCAGGCTTGTGAAGTACCTCCAAATAGTCGGCATGTTCGCCTCCACCTACATGCTCGTGCTGATGTCCATAGATAGGTGCCTGGCCATCTGCCAGCCGCTGCGCTCCCTGCACAAACGGAAAGACCGCTGCTACGTGGTGTTGTCCTGGGTGCTCAGCTTGCTCTTCAGCATCCCGCAGGTGTACATCTTCTCTCTCCGGGAGGTCGGATCTGGAGTGTACGACTGCTGGGGAGATTTTGTGCAGCCGTGGGGTGCCAAAGCCTACATCACTTGGATCAGCCTCACGGTCTACATCATTCCTGTGGCTATCTTGAGCATTTGTTACGGTCTCATAAGCTTTAAGATCTGGCAGAACTTTAAGCTGAAGACCAGGCGCGAGCAGCAGGTCGTCACTCTGAGTCCCACAGCCGCGCGAAACGGTGCGCTTTTGGCGCGCGTCAGCAGCGTCAGGCTCATCTCCAAGGCCAAGATCACCACGGTCAAAATGACGTTCGTCATCGTGCTGGCTTACATCGTGTGCTGGACTCCGTTCTTCTTCGTGCAGATGTGGTCGGCGTGGGATCCAGCTGCGCCCCGGGAGGCAATGCCCTTCATCATCTCCATGCTGCTGGCCAGTTTGAACAGCTGTTGTAACCCCTGGATCTACATGTGCTTTGCTGGACACCTGTTCCATGACCTGAAGCAGAACTTTCTGTGCTGCCCGGCACACTACCTGAAGTCCTCTCAGTGCCGCTGTGATCTGGAGCACAACTCGAGCCGCAAGAGCAACTCCTCCACTTATGTCATGAAGAGCACCAGCAGCCAGAGAAGCATTACCCAGACATCGTCCACATAGACACTGATACTTATCACACATGAGGACCAGGCATAGACCCATACAGAATGGAACAGTGATGTGCACAGATGGTTGTAAGCACATTGAGAGGAGCCTAATCAAACTCATTATCAGGACACTGGTGGAAGTTTTGGCTCCATCGCTGTGATTACTTCCtggactgcaaaaaaaaaaaaaaaaaaagactaccaTCAGAGGAAAGGGTGACTGTAATGTCATAGCAGATGGCATGTTACCATACATGCAGCCAAGAAAATGTCTGGCTCCAGATTAAAATCTGTTTGGCTTCCAGTAGAGAGgtcttttttaaaacctttgacTTGTTTTTTCTGATTCTAACTTAAATATGCTATTCAGTCAGTATTGCCACTCATCAACATTCCAttcattctcagaaaaaaaaagaaataaactatTTCATAGCTTTTCTTGTTACTTAAAGTCATATCTTGTGAAAACTGCATGTATTTTGTGGATTTACTAACATATTCTAAGATCAAGTCAGTAATGAGGACTAGACTCCATGTTTCAGTATCAGCTTGACAACAGTAACGCCTGTAGTAACAATTCAtggttttttcttcatttttttcaacagacatagttctgttttgtttgcttttttattatCAAGGAGCTCTTTAAGAGCTCAGCATTACTTTcccttttcttcctcatgaGTTATTCTTTGGTTTTATTCACCCAACAGTATCTTCTTGATCAGTTTCTATAGCCATtgctatttattttacagccaCATACTTTGTCATACTCATTTGCAGAGAATatgtaatcacacacttctgtgATGTTAACAGAAAGTGTGACCCCTGTGAGATAACTCTGTTTTATTGAAGTAAAATTCTGAATGTTTCCctaaaaaaagatatttgagGGCAGGTCAGCTAGTGTGCTTGTCCAACAACACAGAAATCTGGCATCATTTTTCTCACTTGCTGCATGCTGTAAGAAAGGAATGTCCTaatgtctcatttttttaaatccagcagTAAAATGATTGTTCAATGAT

Function

symbol description
oxtr Enables peptide hormone binding activity. Acts upstream of or within neurohypophysis morphogenesis and positive regulation of angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Orthologous to human OXTR (oxytocin receptor).

NR:

description
PREDICTED: isotocin receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0048848 neurohypophysis morphogenesis biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004990 oxytocin receptor activity molecular_function
GO:0005000 vasopressin receptor activity molecular_function

KEGG:

id description
K04229 OXTR; oxytocin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
TU32920 False 1757 TUCP 0.42 2 15461950 15469229
XM_026919171.2 False 2394 mRNA 0.47 3 15462073 15470159
XM_026919181.2 False 2341 mRNA 0.47 3 15462073 15470172
XM_034314036.1 True 2542 mRNA 0.47 3 15462073 15495209

Neighbor

gene id symbol gene type direction distance location
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding downstream 183237 15276905 ~ 15278713 (-)
nprl2 nprl2 coding downstream 422347 15033446 ~ 15039603 (-)
zmynd10 zmynd10 coding downstream 429388 15025127 ~ 15032562 (-)
LOC113535748 rassf1 coding downstream 437417 15010827 ~ 15024533 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding downstream 452767 14887465 ~ 15009183 (-)
rad18 rad18 coding upstream 10435 15505644 ~ 15568428 (-)
srgap3 srgap3,LOC107750258,LOC107657972 coding upstream 123142 15618351 ~ 15727114 (-)
cish LOC108272001 coding upstream 257004 15752213 ~ 15756341 (-)
LOC113530515 wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800 coding upstream 267327 15762536 ~ 15775878 (-)
wdr82 wdr82,swd2,LOC106565976 coding upstream 282981 15778190 ~ 15784244 (-)
G27904 LOC108271919 non-coding downstream 77860 15382914 ~ 15384090 (-)
G27801 sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934 non-coding downstream 215597 15244315 ~ 15246353 (-)
G27706 NA non-coding downstream 310901 15150812 ~ 15151049 (-)
G27705 NA non-coding downstream 315795 15144705 ~ 15146155 (-)
G27699 NA non-coding downstream 331690 15130003 ~ 15130260 (-)
G27953 NA non-coding upstream 8623 15503832 ~ 15504043 (-)
G28173 NA non-coding upstream 119816 15615025 ~ 15616748 (-)
G28182 NA non-coding upstream 186361 15681570 ~ 15682044 (-)
G28191 NA non-coding upstream 225558 15720767 ~ 15725456 (-)
G28207 NA non-coding upstream 291644 15786853 ~ 15788153 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 949 15456635 ~ 15461001 (-)
G27843 NA other downstream 162931 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 585960 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1403505 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 1554761 13864944 ~ 13907189 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 630621 16125830 ~ 16135715 (-)
G29158 NA other upstream 1777746 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1977121 17472330 ~ 17529315 (-)
G29263 NA other upstream 2453948 17949157 ~ 17949718 (-)
G29279 NA other upstream 2575778 18070987 ~ 18072909 (-)

Expression


Co-expression Network