G27935


Basic Information

Item Value
gene id G27935
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15477790 ~ 15478008 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU32928
TAAATACACAAACTGGGCATAAGCGTCAGTCCAACTCACTTGCTCTTCTTTAGGGGTGGGAAAACCACATCCAGAGCATATTCTGCTGATTTTGTGTAACAAGCAATCTTCCATCCAGCACTTCTGTTTACCTAAGTGACCTACTTTCTTATTCACTTGGTCACATAGCTGAATCATCTACACCTGGCACCTGTATTAGTTAACTCACTATGGTCCAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32928 True 219 lncRNA 0.42 1 15477790 15478008

Neighbor

gene id symbol gene type direction distance location
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding downstream 199077 15276905 ~ 15278713 (-)
nprl2 nprl2 coding downstream 438187 15033446 ~ 15039603 (-)
zmynd10 zmynd10 coding downstream 445228 15025127 ~ 15032562 (-)
LOC113535748 rassf1 coding downstream 453257 15010827 ~ 15024533 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding downstream 468607 14887465 ~ 15009183 (-)
rad18 rad18 coding upstream 27636 15505644 ~ 15568428 (-)
srgap3 srgap3,LOC107750258,LOC107657972 coding upstream 140343 15618351 ~ 15727114 (-)
cish LOC108272001 coding upstream 274205 15752213 ~ 15756341 (-)
LOC113530515 wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800 coding upstream 284528 15762536 ~ 15775878 (-)
wdr82 wdr82,swd2,LOC106565976 coding upstream 300182 15778190 ~ 15784244 (-)
G27932 NA non-coding downstream 5243 15472341 ~ 15472547 (-)
G27904 LOC108271919 non-coding downstream 93700 15382914 ~ 15384090 (-)
G27801 sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934 non-coding downstream 231437 15244315 ~ 15246353 (-)
G27706 NA non-coding downstream 326741 15150812 ~ 15151049 (-)
G27705 NA non-coding downstream 331635 15144705 ~ 15146155 (-)
G27953 NA non-coding upstream 25824 15503832 ~ 15504043 (-)
G28173 NA non-coding upstream 137017 15615025 ~ 15616748 (-)
G28182 NA non-coding upstream 203562 15681570 ~ 15682044 (-)
G28191 NA non-coding upstream 242759 15720767 ~ 15725456 (-)
G28207 NA non-coding upstream 308845 15786853 ~ 15788153 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 16789 15456635 ~ 15461001 (-)
G27843 NA other downstream 178771 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 601800 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1419345 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 1570601 13864944 ~ 13907189 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 647822 16125830 ~ 16135715 (-)
G29158 NA other upstream 1794947 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1994322 17472330 ~ 17529315 (-)
G29263 NA other upstream 2471149 17949157 ~ 17949718 (-)
G29279 NA other upstream 2592979 18070987 ~ 18072909 (-)

Expression


Co-expression Network