G28232


Basic Information

Item Value
gene id G28232
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15929041 ~ 15933858 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33280
ggtcattgtccatctgcactgtgaagcgccgtccaatgagttctgaagcatttggctgaatatgagcagataatattgcccgaaacacttcagaattcatcctgctgcttttgtcagcagtcacatcatcaataaatacaagagaaccagttccattggcagccatacatgcccacaccatgacactaccaccaccatgcttcactgatgaggtggtatgcttaggatcatgagcagttccgttccttctccatactcttctcttcccatcactctggtacaagttgatcttggtctcatct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33280 True 302 lncRNA 0.38 2 15929041 15933858

Neighbor

gene id symbol gene type direction distance location
LOC113536620 slc6a13l,LOC108271591,LOC108436256,LOC107673491,LOC107567081,LOC107712076,LOC107658051 coding downstream 18969 15899291 ~ 15910072 (-)
cadpsb cadpsb,LOC108271493,LOC108436257,LOC107673496 coding downstream 54323 15795801 ~ 15874718 (-)
cplane2 rsg1,LOC107673497,LOC107750284,LOC107712114 coding downstream 134265 15791568 ~ 15794776 (-)
wdr82 wdr82,swd2,LOC106565976 coding downstream 144797 15778190 ~ 15784244 (-)
LOC113530515 wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800 coding downstream 153163 15762536 ~ 15775878 (-)
LOC113536633 LOC108271735,LOC108413697 coding upstream 1923 15935781 ~ 15951487 (-)
LOC113536636 LOC108271735,LOC108413697,LOC105889205 coding upstream 26306 15960164 ~ 15975984 (-)
fkbp5 fkbp5,LOC108271732,LOC108413698,LOC107712109,LOC107673486,LOC107667344 coding upstream 78140 16011998 ~ 16024469 (-)
entpd8 entpd8 coding upstream 114135 16047993 ~ 16056687 (-)
tgfa LOC108271731 coding upstream 140188 16074046 ~ 16083778 (-)
G28207 NA non-coding downstream 140888 15786853 ~ 15788153 (-)
G28191 NA non-coding downstream 203585 15720767 ~ 15725456 (-)
G28182 NA non-coding downstream 246997 15681570 ~ 15682044 (-)
G28173 NA non-coding downstream 312293 15615025 ~ 15616748 (-)
G27953 NA non-coding downstream 424998 15503832 ~ 15504043 (-)
G28256 NA non-coding upstream 101975 16035833 ~ 16045675 (-)
G28258 NA non-coding upstream 104125 16037983 ~ 16039793 (-)
G28278 NA non-coding upstream 188871 16122729 ~ 16122949 (-)
G28325 NA non-coding upstream 247217 16181075 ~ 16181718 (-)
G28331 NA non-coding upstream 262716 16196574 ~ 16196867 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 433832 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 468040 15456635 ~ 15461001 (-)
G27843 NA other downstream 630022 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1053051 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1870596 14050401 ~ 14058445 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 191972 16125830 ~ 16135715 (-)
G29158 NA other upstream 1339097 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1538472 17472330 ~ 17529315 (-)
G29263 NA other upstream 2015299 17949157 ~ 17949718 (-)
G29279 NA other upstream 2137129 18070987 ~ 18072909 (-)

Expression


Co-expression Network