G28256


Basic Information

Item Value
gene id G28256
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16035833 ~ 16045675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33314
GACTGGGTGAGAGATTGGTGTAGTCTCTGGTTCCGAGATGAAATATGGATCAGAGACCTGTGAAATACAGGCTgttaaattcaaacaaataaatcGTGGAGAAGAATATACAtttgtaaataagtaaaaagtGATCAAATTAATCGTAAACAATTTAATAGAGATATTACATGCATACCCTTGAGTCATCCTTAGTCACTTgatcatctgtttttttctggttgcTCTCATAATCATCATGTGTAAATGCACCTAGACCACTTCTTCCCTTCGCTGTACGTCTGGACCCAAACTTTCGCCTACCTTCTGGAAGCAGTTGCCCTGTGTCTTGTGTACTACTCTCATTTATTCGAGAGAGAGCTTGAACTTCAGACATGAGTTCAACCGATTCTTTCATGTCTTCTGTGCCTGCTGCCATGACAGTTTCCTTAACTGTCTTTGCCTCTCTTTTAGGTTCACTATTTTTAGCATTATTCTTGTCCAAATTCTCTTTTTCCTGTTCTGACCCTCCACTCTCATTGGATATTTTTTCTGCATGCTTGTTTCTAGACGTCTTGCGACTTGACCCCATTTTTCTCCTTCTTGCTGGGGAGCTCGGTTCCATGTGAATTTGAGGGTTCTGAGATGATGGTAGCTGAAGAGACACCTCAGACATTGGCTCTGAGAATTCTGATATATTAGGGTTAAGAGCTGTAGTATTTAGGGTACATTCAAAACTTTTATTTAGGTAAAACTCTATCTCACTAAGAAGGGAGCCTTCTGACTGATCAAGATTATTATGAATTTGTGGTTCATACTCTGGTACTCTTGTCTTTGTGTCACCAAAGATTGAATCAGGGTTAACTGAGTCTTCTATTGCTACTAATTTTAAATGCTCTCTATCAATGTCTCCAGCATATCTTGGGTTCATATCTTTAGTTTTTTGCAATGCTTCCTGTTTACTTTGTCCTTCTTCAAGATTCTTGCAAGTTGAACTCATTTTTTCTGCTTCAGGATCTATGATGTTTAGTGGctcagaatgtgtttgtatggaTTGATGAGATATTTTGGTAGTTAAGTTGAATGTCCTTTCTTGTGCATGATCTTTCTCTGAGGTTGATGTAATTTCTTCTGTTGTTTGTTCctggatgttttctttttcctttatcACTCTAAGACTCCTTCGAGTTGAAGCTATCTTCTTCCTTCTCCCAGAGTTTCCTGAATGTCCTGAATTCTGTGTTGCCATTTCATCTGGGGCCAGTTTTAATTCCTGTATGTGAACAACTGAGCATGTGCTTTCACATTGCTCTGGTTTTGAGTCTCTGTTTTTTGGATTCTCTAGATGTTCTTCAGACATCATGTGGTACTGTTCAGATACAACTGGCATGTCTAATCTAGCGTGTGTTTCAGGAATAAGTTCTATTGGGCCATGAGTAGGATATGCTGGTTGATTGGCACTTTCATTTTCAGTGCACTCGATACCTTGCTCATTTCTCAAGGATGGTTCAAGGATATCAAGTGACAACTCACTTATAGCATCCTGTAGCTCAGTAAGCAAGTTTGAACTAGCTGCTTGACCTACGATTTGTATTTCTTCTGTATCTTCCACATCTTTCCATTCTCCTTCCTCTCCTACAGCATGTGGTTGGTGTCTTCCATGGGGTCTCCGTGTTGATccaaatttcttctttttcttagttTGAGACATGTTCTGTGACATGTTTGAGACATGTTCTGTGAAAGCATCATCCTGTATTTTTGTGATGACTGGTTCCATTTCTTGCTCATATAAAAGTGTTGACTCGgcaacattttcctcattcaCTCCTGATCTTTCATGTTGCTCTATAATATCAGTCAGTCCTTCTGCATTGCTTACCTCGTCAGAGACCACAGTGTGAATCTGATCAACCTCATGTGATAATATGGCAAGTGACGCATCGATCCCTTCAGTCACGATTTCAACTTCTGCTTTAATGATTTCTTTTTGTTCAGTTGTCATTGGTGAATCATGGATGTCAAGTGTCACCTCACTCATAGTATTCTGTGGTTCAGTGAGCAGGTTTGAAGTAGCAGCTTGAGTTATTATTTGATGTTCAGTTTGTTCTGTATTTTCTGGATCTTTCCattctccttcctctccttcaGCATGTGGTTGGTGTCTTCCATGGGGTCTCCGTGTTGATccaaatttcttctttttcttagttTGAGACATGCTCTGTGACAAGTTTGAGACATGTTCTGTGAAAGCCTCATCCTGTATTTTTGTGATGACTGGTTCCATTTCTTGCTCATATAAAAGTGTTGACTCGATATCATTCTTCTCATTCACTCCTGATCTTTCATGTTGCTCTATAATATCAGTCAGTCCTTCTGCATTGCTTACCTCGTCAGAGACCACAGTGTGAATCTGATCAACCTCATGTGATAATATGGCAGGTGATGCATCGATCCCTTCAGTCACGATTTCAACTTCTGCTTTAATGATTTCTTTTTGTTCAGTTGTCATTGGTGAATCATGGATGTCAAGTGTCACCTCACTCATAGTATTCTGTGGTTCAGTGAGCAGGTTTGAAGTAGCAGCTTGAGTTATTATTTGATGTTCAATTTCTTCTGTAGTTTCTGGATCTTTCCattctccttcctctccttcaGCATGTGGTTGGTGTCTTCCATGGGGTCTCCGTGTTGATccaaatttcttctttttcttagtcTGAGTTTGCGTATGGATTTCTGCATTTGTCTTTTCCACAGTCTCTACGCTATTTCTATCATCTTCCTTGAAATCACCATGCTCTGTTGCAGCTGATGAATGTTCGATGGTAGTTTGAGAGGATAAAAAAATTTGAGAGGATAATTCAGAATACATATATTGTTGTGAGCACGTAGATATATCTGTAAAAGCCATATATTTCTCCTCTCCATACATATCCTCATCTatatctttttcttctctctttcctccaagAGTCCTGTGTATTGATCCCATTTTTCTTCTGTGACTGTCTTTGCTAATCAGCATACAAGCTTCCTCATGAAAAGGAGTAGTGGTGGCTTGTAGGATGTTTTCCTCTGACAATTGAGCTATTTCAGCTGCATCCATAGGTTCAGCAGAAGTTATGAGGTGATCAGTATTTATTGTATCAGTAACAAACTCAGTACATTCTGATGATTTGGACAGTCCTAATTTCAAATCTGGATAAGTATTTTGATGAAGATTTTCTAATGATATGCGTTGACCATCCTTGTCTCCCTCCCATACTGCTTCTTCATTTCGTGCTGTACTTTCAACCACTTCTGTTATGCTTTGCATGTTGAGGACCTCAGTATCAACCACATCTGATAATACTACATGTGTGGTATCCAGCCCTCTGCAAATATTTTTTACCACTACTGTTTCCTCACCCTGTCTGTCAAGTACACTACATTCTTGATTTGTGTTGACAACTTCTGTTGAGATGTGCTGACGTGTTTCATTATATTCTTGTGAAGTGTATGTGTTCTCATTTTTAACCACAGctttaatcacattttcatccattttttcttcttcaggttCCATGATATTCAATGACTCTGAGGACTGAGGATAACATGTTTCAGGAGAGAGGCTGAGTGTTCCATCCTCTGACATTGGTGTACTCTCTTCTGAGCTTTGTACCTGCATGGTTTCCTTCATTGTTTTAAAACTGTCTTTCTGGTCACCTCCTGAGATCAGTCCACTAAGACTCCTTTGAGTTGAATCTATCTGTTTTTTCTCAGAGGGGCTAAATCTAACATTTTCTGCTACTGCATCATCCTGACCCTGTCTTGAGTCCTGTATGTAAACAATTCGAGATGTGCTTTCAAACTGCTCTGCTTCAGATTCTGTATTTGTTGGATTTACTAGACATTCTTCAGACATGTTTTGCTTCTGATCAGGTAAACCTATGGCATTATACACCTGCATGTCTAATTTGACTTGTGTTTCAGGAATGATCTCCATTGGGTCACTTGTAGGATAAGCATGAACTGGGCTGCCACTTCCTTTATCAGGACTCCCAATACTATGTTCTTCGACTACCATGGATGCCTGGTCTGTAAAAGCATAATCTTGTATATTTGTGATGACTGATGCCGTTTCACGCTCATTCATAAATGTGGACATGCCATCCTTTTCATCATTCACTCTTATAAAGTCCTCCTTGGTAAAATCTTTTGTGGAACCAGCATTTATTTCTTCCTTTATGTCATTATTCTCCTCCTCAATAACCTCACTTTCTATGTCTAAAAACTCAGATCTATCATTGATTACTTCATCAAGCACCTGATCAGAACAAACTCCTTCCTCTGACTGCATCTCCAATTCAGTTGGAAATTCCCCTGGATTGTTATGTTGAAGGTTGCATGTCTGGCTGCTGGTTGCGGTTTCCCCGTACAGAGTTTCAGCAGGAATTAGTTCAGATTCAGTGACAAAATCTAACATATTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33314 True 4458 lncRNA 0.41 2 16035833 16045675

Neighbor

gene id symbol gene type direction distance location
fkbp5 fkbp5,LOC108271732,LOC108413698,LOC107712109,LOC107673486,LOC107667344 coding downstream 11364 16011998 ~ 16024469 (-)
LOC113536636 LOC108271735,LOC108413697,LOC105889205 coding downstream 59849 15960164 ~ 15975984 (-)
LOC113536633 LOC108271735,LOC108413697 coding downstream 84346 15935781 ~ 15951487 (-)
LOC113536620 slc6a13l,LOC108271591,LOC108436256,LOC107673491,LOC107567081,LOC107712076,LOC107658051 coding downstream 125761 15899291 ~ 15910072 (-)
cadpsb cadpsb,LOC108271493,LOC108436257,LOC107673496 coding downstream 161115 15795801 ~ 15874718 (-)
entpd8 entpd8 coding upstream 2318 16047993 ~ 16056687 (-)
tgfa LOC108271731 coding upstream 28371 16074046 ~ 16083778 (-)
patz1 patz1 coding upstream 61154 16106829 ~ 16119848 (-)
c2h1orf74 c11h1orf74 coding upstream 126995 16172670 ~ 16175112 (-)
ruvbl1 ruvbl1,LOC107721190,LOC107568195,LOC107667375,LOC107673590 coding upstream 136842 16182517 ~ 16187880 (-)
G28232 NA non-coding downstream 101975 15929041 ~ 15933858 (-)
G28207 NA non-coding downstream 247680 15786853 ~ 15788153 (-)
G28191 NA non-coding downstream 310377 15720767 ~ 15725456 (-)
G28182 NA non-coding downstream 353789 15681570 ~ 15682044 (-)
G28173 NA non-coding downstream 419085 15615025 ~ 15616748 (-)
G28278 NA non-coding upstream 77054 16122729 ~ 16122949 (-)
G28325 NA non-coding upstream 135400 16181075 ~ 16181718 (-)
G28331 NA non-coding upstream 150899 16196574 ~ 16196867 (-)
G28376 NA non-coding upstream 213183 16258858 ~ 16259163 (-)
G28375 p4htm non-coding upstream 213761 16259436 ~ 16260312 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 540624 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 574832 15456635 ~ 15461001 (-)
G27843 NA other downstream 736814 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1159843 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1977388 14050401 ~ 14058445 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 80155 16125830 ~ 16135715 (-)
G29158 NA other upstream 1227280 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1426655 17472330 ~ 17529315 (-)
G29263 NA other upstream 1903482 17949157 ~ 17949718 (-)
G29279 NA other upstream 2025312 18070987 ~ 18072909 (-)

Expression


Co-expression Network