G28258


Basic Information

Item Value
gene id G28258
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16037983 ~ 16039793 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33316
GTACCAGCatttatttcttcctttgtATCATCATTCTCTTCCTCGATTTCCCCAGTGTTGGTACCTTCTTGGTCCATATTTTGTTCCTGtatgttttctttgtcttttatcGCTTCCAGTTTGTTTTCCTGGTCACCTCTAGGGATTTGCCCTCTAAGGCTCTTTCGAGTTGAACCTATCTTCCTCCTTTTCTCAGAGCTGCTAAATTCCAAAGTTTCTTTTGTCACATCAAGCTGAGATGATTTTGATTCCTGTATCTGAACAAATGGGCTTGTGCTTTCAAGTTGCTCTGCTTCGGATTCCCTGTTAGTTGGATTCTCTAGATGTTCTTCAGATATGTTTTGGTTCTGATCAGATACGACTGCATGAATATGTTCTGTGTTCATCTGCATGTCTGACATGGCCTGTGTTTCAGGAATGAGCTCCACTGGGCCACatgtattataaacattaacttCACTGGCAACATGTTCATTATCAGGACTCCCATTACCATGCTTTTTGACTGCTAGGGAGACGTGTTCTGTGAAAGCATCATCCTGTATTTTTGTGATGACTGGTTCCATTTCTTGCTCATATAAAAGTGTTGACTCGGCAACATTCTC

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33316 True 605 lncRNA 0.41 2 16037983 16039793

Neighbor

gene id symbol gene type direction distance location
fkbp5 fkbp5,LOC108271732,LOC108413698,LOC107712109,LOC107673486,LOC107667344 coding downstream 13514 16011998 ~ 16024469 (-)
LOC113536636 LOC108271735,LOC108413697,LOC105889205 coding downstream 61999 15960164 ~ 15975984 (-)
LOC113536633 LOC108271735,LOC108413697 coding downstream 86496 15935781 ~ 15951487 (-)
LOC113536620 slc6a13l,LOC108271591,LOC108436256,LOC107673491,LOC107567081,LOC107712076,LOC107658051 coding downstream 127911 15899291 ~ 15910072 (-)
cadpsb cadpsb,LOC108271493,LOC108436257,LOC107673496 coding downstream 163265 15795801 ~ 15874718 (-)
entpd8 entpd8 coding upstream 8200 16047993 ~ 16056687 (-)
tgfa LOC108271731 coding upstream 34253 16074046 ~ 16083778 (-)
patz1 patz1 coding upstream 67036 16106829 ~ 16119848 (-)
c2h1orf74 c11h1orf74 coding upstream 132877 16172670 ~ 16175112 (-)
ruvbl1 ruvbl1,LOC107721190,LOC107568195,LOC107667375,LOC107673590 coding upstream 142724 16182517 ~ 16187880 (-)
G28232 NA non-coding downstream 104125 15929041 ~ 15933858 (-)
G28207 NA non-coding downstream 249830 15786853 ~ 15788153 (-)
G28191 NA non-coding downstream 312527 15720767 ~ 15725456 (-)
G28182 NA non-coding downstream 355939 15681570 ~ 15682044 (-)
G28173 NA non-coding downstream 421235 15615025 ~ 15616748 (-)
G28278 NA non-coding upstream 82936 16122729 ~ 16122949 (-)
G28325 NA non-coding upstream 141282 16181075 ~ 16181718 (-)
G28331 NA non-coding upstream 156781 16196574 ~ 16196867 (-)
G28376 NA non-coding upstream 219065 16258858 ~ 16259163 (-)
G28375 p4htm non-coding upstream 219643 16259436 ~ 16260312 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 542774 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 576982 15456635 ~ 15461001 (-)
G27843 NA other downstream 738964 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1161993 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1979538 14050401 ~ 14058445 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 86037 16125830 ~ 16135715 (-)
G29158 NA other upstream 1233162 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1432537 17472330 ~ 17529315 (-)
G29263 NA other upstream 1909364 17949157 ~ 17949718 (-)
G29279 NA other upstream 2031194 18070987 ~ 18072909 (-)

Expression


Co-expression Network