G28375 (p4htm)


Basic Information

Item Value
gene id G28375
gene name p4htm
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16259436 ~ 16260312 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33463
CGGAAGGGGAGTGTGAGCAGCCGGCTGCTCTGCTGGTGCCTCAGGACCGCGGCTCCGGCTGCTGAACTCTCTGCTGGAGGAGGCGCCCGCGTCAGCGCCGGTGTTGTAATGCACGTACAGTAACAGGGCAATGACATTAAGGATGTAGACGTGGAAGAAAACCATGACCACTACAAAGTATGATCGTGAACAGACATTGTTCTTCTGCACCGGGAATCGCTCTCGGTGTGACAGCGGCGGATGAAATGACGAGCGCGCGCTGCCATCCTCGTGCACCCGGCCCTCGGCTTCCGTCATTGTGCCTGACTCCCGGCGactgagtgagtcagtgaaagTCCGTCAGCTGGTCGGTTCAGCGGATTCTCCACAGAGCAGGTAGAGCACAGACTGTGGTTTATGGGACGCTGCAATGACAGCGAAATGTTCACGCATGAAAACATAACATTCGTCACGGTCAACGTAGCCGCCTAACTAACCTTCTAGATAAAATTACTAAGCAGCTCGTCACACTGGGTGTCAACGACATGTCAACGTATTAGAGGTTAAGCATAAGTTTATTTTCGAGCAGCTAATGTCTGAGTAGCGGCTAAGCCGAGCTGAAAGCTTGCTCTCACAGCAGCAGCGCGCTCTCGTCAGTGTTTCTACCGCACACACGCTCTCAGAGCTCCGGCACCAGCGGCACTGCGCAGCTCCGTCTCCCGGGATTCAGATCCAGCCGGACGCCAGCCATGATGCTATTACTGAAGTTAGTCCTTTAACACTTCCCATTGTGCAGTTTAGGACATCTGGTCAAGTGTTTCGCTCCTGTTACTCGCTCGTAACGACCTTTACAGCTGACCCCGGCGCAGAGAAGCCCTGCCTGGAGATGAGCCGCCAT

Function

symbol description
p4htm Enables 2-oxoglutarate-dependent dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to act upstream of or within regulation of erythrocyte differentiation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum.

NR:

description
PREDICTED: transmembrane prolyl 4-hydroxylase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33463 True 877 lncRNA 0.38 1 16259436 16260312

Neighbor

gene id symbol gene type direction distance location
si:ch211-157b11.8 LOC108271679 coding downstream 34236 16221165 ~ 16225200 (-)
gata2b gata2 coding downstream 49474 16202388 ~ 16209962 (-)
ruvbl1 ruvbl1,LOC107721190,LOC107568195,LOC107667375,LOC107673590 coding downstream 71556 16182517 ~ 16187880 (-)
c2h1orf74 c11h1orf74 coding downstream 84324 16172670 ~ 16175112 (-)
patz1 patz1 coding downstream 139588 16106829 ~ 16119848 (-)
slc26a6l LOC108271864,LOC108440479 coding upstream 11556 16271868 ~ 16281761 (-)
iho1 ccdc36 coding upstream 27859 16288171 ~ 16299906 (-)
rereb LOC108271943,LOC108440553,LOC107721179,LOC107584416 coding upstream 67559 16327871 ~ 16346280 (-)
eno1b eno1b,LOC108271510,LOC108440571,LOC107721178,LOC107568188,LOC107712086 coding upstream 86273 16346585 ~ 16354141 (-)
frs3 frs3,LOC107667350,LOC107584505,LOC107568202,LOC107673473,LOC107712068 coding upstream 112470 16372782 ~ 16386220 (-)
G28376 NA non-coding downstream 273 16258858 ~ 16259163 (-)
G28331 NA non-coding downstream 62569 16196574 ~ 16196867 (-)
G28325 NA non-coding downstream 77718 16181075 ~ 16181718 (-)
G28278 NA non-coding downstream 136487 16122729 ~ 16122949 (-)
G28256 NA non-coding downstream 213761 16035833 ~ 16045675 (-)
G28383 NA non-coding upstream 3302 16263614 ~ 16264242 (-)
G28384 NA non-coding upstream 4612 16264924 ~ 16265160 (-)
G28385 NA non-coding upstream 6244 16266556 ~ 16266755 (-)
G28515 NA non-coding upstream 68796 16329108 ~ 16329421 (-)
G28508 NA non-coding upstream 97827 16358139 ~ 16359521 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 123721 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 764227 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 798435 15456635 ~ 15461001 (-)
G27843 NA other downstream 960417 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1383446 14872948 ~ 14875990 (-)
G29158 NA other upstream 1012643 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1212018 17472330 ~ 17529315 (-)
G29263 NA other upstream 1688845 17949157 ~ 17949718 (-)
G29279 NA other upstream 1810675 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 1887916 18148228 ~ 18195628 (-)

Expression


Co-expression Network