G28384


Basic Information

Item Value
gene id G28384
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16264924 ~ 16265160 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33472
tgaaaagagagatcagaggaaaatggccagattggttagagctgccaggaaggatatagtataatcaaataatcatgctttacaactgtggtgagcagaaaacatctcagcatgcacagaacattgaaccttgaggtggatgagctacaacagcagaagaccacattgggttccactcctgtcagccaagaacaggaatctgaggctatcatgggcgcagattcacccaaactggac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33472 True 237 lncRNA 0.39 1 16264924 16265160

Neighbor

gene id symbol gene type direction distance location
si:ch211-157b11.8 LOC108271679 coding downstream 39724 16221165 ~ 16225200 (-)
gata2b gata2 coding downstream 54962 16202388 ~ 16209962 (-)
ruvbl1 ruvbl1,LOC107721190,LOC107568195,LOC107667375,LOC107673590 coding downstream 77044 16182517 ~ 16187880 (-)
c2h1orf74 c11h1orf74 coding downstream 89812 16172670 ~ 16175112 (-)
patz1 patz1 coding downstream 145076 16106829 ~ 16119848 (-)
slc26a6l LOC108271864,LOC108440479 coding upstream 6708 16271868 ~ 16281761 (-)
iho1 ccdc36 coding upstream 23011 16288171 ~ 16299906 (-)
rereb LOC108271943,LOC108440553,LOC107721179,LOC107584416 coding upstream 62711 16327871 ~ 16346280 (-)
eno1b eno1b,LOC108271510,LOC108440571,LOC107721178,LOC107568188,LOC107712086 coding upstream 81425 16346585 ~ 16354141 (-)
frs3 frs3,LOC107667350,LOC107584505,LOC107568202,LOC107673473,LOC107712068 coding upstream 107622 16372782 ~ 16386220 (-)
G28383 NA non-coding downstream 682 16263614 ~ 16264242 (-)
G28375 p4htm non-coding downstream 4612 16259436 ~ 16260312 (-)
G28376 NA non-coding downstream 5761 16258858 ~ 16259163 (-)
G28331 NA non-coding downstream 68057 16196574 ~ 16196867 (-)
G28325 NA non-coding downstream 83206 16181075 ~ 16181718 (-)
G28385 NA non-coding upstream 1396 16266556 ~ 16266755 (-)
G28515 NA non-coding upstream 63948 16329108 ~ 16329421 (-)
G28508 NA non-coding upstream 92979 16358139 ~ 16359521 (-)
G28537 NA non-coding upstream 196942 16462102 ~ 16489915 (-)
G28779 NA non-coding upstream 305630 16570790 ~ 16571524 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 129209 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 769715 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 803923 15456635 ~ 15461001 (-)
G27843 NA other downstream 965905 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1388934 14872948 ~ 14875990 (-)
G29158 NA other upstream 1007795 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1207170 17472330 ~ 17529315 (-)
G29263 NA other upstream 1683997 17949157 ~ 17949718 (-)
G29279 NA other upstream 1805827 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 1883068 18148228 ~ 18195628 (-)

Expression


Co-expression Network