G28779


Basic Information

Item Value
gene id G28779
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16570790 ~ 16571524 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU33936
GTAGACACTCCTAACACACAAtgactatgtttacatgcacatcagatTCTGTTGAAGGTCTATAtttgggttgcagGAATATttctgtatacatggttgttgtaagtatgtaTCTACACATGCACTTTTATGCATGCTACATGCTGTTATTTCCCGGGAGATTCAAGATGCTGTCGTTGGTTATGGAGTATGCtcagttattagttttattactactttttcaCACTAATTAGGACTCTAACACTTCTCACCATCAAAAATGCCCAACAACATTGGAGAGGCTCGGGTAAGCATCTGttaagctaagcatctgttagcacccacaattccttgtggactgagcatgcgcatatatctcctttcagtggattttctgaataaggtgtttacatgcatcaaatttccatttaaaacagaCATATTCCAGGGGTagaaatcagaatattgtcttaatctgaatcgggcaatcggaCTGCAGCATTTACGTGACTCAgcactaattagaatattgccaaattatgattaatatcggaatattgatgtaCATGTAAACATAGTCAGTGTTATCTGTTGTGGCCTCTTGTTGACTAACATGACATAAGAACCCATTGTTTTGGGAATTTTGATAAAGTGATgtaatggcatttttttttttaacaaacctgagtttaaaaacatttcttatGAATTCTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33936 True 695 lncRNA 0.36 2 16570790 16571524

Neighbor

gene id symbol gene type direction distance location
LOC113523777 artn coding downstream 51632 16491681 ~ 16519158 (-)
rad54l rad54l coding downstream 81861 16476425 ~ 16488929 (-)
LOC113531657 LOC108272136 coding downstream 116224 16436840 ~ 16454566 (-)
prkcda LOC108271968,LOC108440644,LOC107582675,LOC103030273,LOC107667398,LOC107721176,LOC107673500,LOC107712078 coding downstream 140694 16419260 ~ 16430096 (-)
ddi2 ddi2,LOC102794950,LOC107721177,LOC107673502,LOC107667352 coding downstream 153971 16406576 ~ 16416819 (-)
kdm4aa kdm4aa,kdm4a,LOC108412690 coding upstream 17823 16589347 ~ 16622597 (-)
ptprfa ptprf,ptprfa,LOC107709086 coding upstream 54130 16625654 ~ 16832868 (-)
szt2 szt2 coding upstream 494831 17066355 ~ 17169352 (-)
med8 med8,LOC107690829,LOC107554872,LOC107708572 coding upstream 615121 17186645 ~ 17191459 (-)
LOC113536221 NA coding upstream 626465 17197989 ~ 17203249 (-)
G28537 NA non-coding downstream 80875 16462102 ~ 16489915 (-)
G28508 NA non-coding downstream 211269 16358139 ~ 16359521 (-)
G28515 NA non-coding downstream 241369 16329108 ~ 16329421 (-)
G28385 NA non-coding downstream 304035 16266556 ~ 16266755 (-)
G28384 NA non-coding downstream 305630 16264924 ~ 16265160 (-)
G29119 NA non-coding upstream 482564 17054088 ~ 17054656 (-)
G29167 LOC108272186 non-coding upstream 821934 17393458 ~ 17394467 (-)
G29166 LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 non-coding upstream 823242 17394766 ~ 17396199 (-)
LOC113528975 NA non-coding upstream 852347 17423871 ~ 17429778 (-)
G29174 NA non-coding upstream 861929 17433453 ~ 17434168 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 435075 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 1075581 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 1109789 15456635 ~ 15461001 (-)
G27843 NA other downstream 1271771 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1694800 14872948 ~ 14875990 (-)
G29158 NA other upstream 701431 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 900806 17472330 ~ 17529315 (-)
G29263 NA other upstream 1377633 17949157 ~ 17949718 (-)
G29279 NA other upstream 1499463 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 1576704 18148228 ~ 18195628 (-)

Expression


Co-expression Network