G29158


Basic Information

Item Value
gene id G29158
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17272955 ~ 17280173 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34409
CCGCTGTCTCTCATTATGTCTGCCTGTCTCCCTGTTGTGTTGAGGGGGAAAATGTTCCTGAGGAATAACATTACCTAGAGCTCAGTCCTCTCAGTGCGCTCTGCAGAAACTCACTGCTAAATGGGTTTGGCTTTACGACTTGACTTATTGATACAGCAGCCACTGatccttttttctttgtctatACAATCCCAATATCAGTGTTCTAAGTATCGGCAGTTGCAGATTCAATAGTGGCTATCTCTCACTTTAATAACTGCAGAAGCTGTTATTATTTAGCTGGAGTAATTGGAGAGGTTTCTAGGGTGTTGGTGTGAGGTCGCACAGTTTGCCGTTATTCTCTTTCAGCTAATGATGAGCTTAAGACAGAAATAATGATCCTCACTGAGCTAGTTgagtttgcatttaaaaataaatttgccagtcaacattacacacattaaaaaaacaccagtGGATCAGATCTAAAATATTGCAGGCTTCTGTGATATCAGTGTTtcaaaaatatactgtataattttaataattataaacacacataaaatctCTTTCAAATAGGAGCCTTAGCAGGGAGACTTTACCTTAGGACATCAGTGCTGTCCACATATACATGCATAAATATAGACAGAGAAGGTTTTTAAAGTGCCCTTGATAacaatattgttatatattgtataacTGATTATCGGCCATGTGTaatgatattaaaaacaaataggatgtaaaaaaaagatggcGGCTACTGCTGCCATGTCATCAGGGACTAGTTTTGTGACTTTCTGCTGTGGTGAGCTTCTACCAAAACTGACACCAATTAACGGCCTGCCTAGCTATGTGAGAGTCCCATCgcaggtgtgtgcgtgtgtgtgtgtatgtatcttaAAATAGCCCCTCAGCACACGGCATCAGTGGCAGGGGAACATTTTTTCGAGGAAGTGTGCAGAGCCTCATGCCCCCCTCGAAAGGAAGCAAATGTTCTGGAGCAGAAGAGTGCATCGCTTTTGGCCCATgtcccaatacacacacacacacacacacacacacacacaaacatgagtGCCATCTCGGCTATGTTGTAGCTCAGGAGAAACGGAGCTGCCAGTGTAGGCTCGAATAGACACTGAACATACACCAGAACAGTGCAATAAATTTTAACCAACACCAAACACATTTACTCGCTCGCTTTCTTTTctgccagccaatcacaacAAATCTGCTGACAGGAATGATTCAGATTAGTGCAAATGAAAAAAGCAATGGAAATAGAGAAGGGGTGGGACTTGTTTAAAGGGACATTGGGTAGAATTTGAGCTCTAACAGTTGCAAGATGACATACAATAGCACTTTGTATTACTTGCATATATGAAGCCCTGCCTAACACAGTCTATGATGGCCACCGAAGTTTATCCTTATTTGTTAGGTAAATAGCTAACCTTCCATCTGCTAGCTAACCGAATTCAGTGTTCAACTCCAGGtctcattcacacatttacagacaAAACTCAAAGAAAGAATCTTAAGTGCAATATTCAGGTAAGGCATAAAACACAATTGGGCTGtattattataggaaaataatccaaaataGGTTAGTGTGATATGTATGGCCAGATCCaaatcgtttttttttcctataacagcatgccaattgttatatttctcttatttcacagcaatttgccaacaatagAGTATTAGAGAGAGCACAGTCagagttgtgctgttatagaaaattaatcacactTTCAGATTCGAGAAGTCAACcacactgtttatttaacatttaatttatccAGGCAAGTCATAATAGTAAGAACCATTTTAGAGGGCACTTGTAAGGCATTTTAGAGGGAAGGGGGTTTGCAAATCATGATTCACAATTTAGAGTGCTTTTAATATAAGGACCCAGTGAAATGTTTGTAGATTTATAAATCTCATTATTGATTTGCAGTTCACAAATTAATGATGTCTTCAGTAGAATGACATTTGACAGGTAAATAACTCCATAGTAGTAATGATAAAATCCTGTCTCTACAGAGTGCTAGCTTTGTTCTCTCCAGCGCATGCTCAGCAGTTCAGCAGCGATCATCCTGTCAAATGCTGGCAGTGCTGCAGCAGCGGGAACAGGTGCTTCTTGTTTGGGAAGGTCACTTCAGGACTCTGCTGTTGGAAAGGTTATGATCCGAGGCAGTGTGCTGACATCAAACACTGCCAAGttaagccacacacacacacacacacacacacacacttgacccCATTTTATGTCATGTACAGTAGATATGGAGTCACTTTCATAGATAATCATAGAGTTGCACTGTATGATTATCAGGATTTAATGTCAGAGTTCAGAATTTCTTTTGGATCTCTTTTTCCCACTTActctttattttcatcttttctctTGCTCagtcttttcctcttttttttctatatctctctctccctccctcttttctatttctctctctctcaggctggtGAAGTGGGCCTGGCATTTTTATGACCAGTGGCCTGAAATGCAGGCATGAGTCATGTGGATAAGAGAGTGCACACATGtatgcgtgcacacacatacacacacacacacacacctctcccgACATGCAACATACTACACTCATAAGCAGCTTCAGCAGATGTGATCTCACCTGCTGTGTGGAAACACTGGGAGAACAAATGTGAATTTAGCCTAAAGACtaataaataagatttttaaaataagaataagaagtTACGCTTATTTTATTGCATCCCCATTTGTGTTTCATGTAGCTCTCAGGGATAAAAGCTGAAAGCTGAGTGTGCCAATAGACGCGTTCCAGTAATTGGTATATGATATACTGCAATATTCAAACCTGCACAATTTTGTTAGAGTGAATCTGTCACTATTCCTATATTTTATGTGAGAAAAGTTAGACACTTTGTGTTCATGAGAGAACAAAGGCAACATGAGGACAGCTGTCTTCCAAGGGTCCTTATTTCAGACAAATCTAAATGGGGGCATCACAtgtgtccttctctctctctatcccataattctgttaaATCTCAAATGAGATGCCACTGAGGCTCatttacaattaaaatgttGGCCAATGAAAACAGATactagtattatttttttttaaatacaatatagTAAGTGTAATAAAATGCTAGGCATTTATTGTgacatgaaaatgtaatatcagcacatgcctgCTCGTGGCTTTGGCCTCCGGCACATCATTTTGCCTGAGATGCCAAACGGTATTCATAATGAAAATGCCATTCGACGGCACTGTCAGCATCCCCTCGTCACAGTTTCATCAGCCCGCCGCTGTGTatctaattgttttttttttcctctccctaCTCAGGCTAGACTGCCTGATAACTCCATATTCTGACAGAAGGCGAGAGATAAAGCGAGGTTAAGAGTTTGGAGGATAACGTAACCTTGATAAAACACTTGTCTCAATGGCGCTGatctccatccatcttcagCCGTCATGAAGTATGCAAATGGGGCGTCGGCGAGAGCTAAAACACCACCGCGGTTAAATGGGCCATTTCAAATGCTTTGTGCATCACACTGACAACCACATTTCCCCCTCACGATTGTGCCACTACACTGCTCATCCTCCCTCTTCTCCTCCGTCTTCTTTTATTTACACCTTTCTCCTGTTCATCCTGCTCCATCCTTCTACACTTTCACTTTCCCCCCAGCCTGCTTCACAAATTAGAGATATACAGCCTGGTGTCAGGACGGCTActcataaaatattaacagcGTGTAGAGAGTTTTGTGTCGCTACATTCCTCTTCATTTTTAACTCCGTCAGCACAAGCCGTGGCACAGTTATTTGTGTATGCTCATCTGTTTTAATACCTGGTTTATACAAGGCCATGTTCACCAGCTATCTCTCCACTTATTCACTTTGGGGCTTTCACAACTAACATATTTTAAGCTGTATTTTTAGACTCAGAGGTTAAAAAATGGTGTAGGTAAACCCATTCTGCAAATgatctattattatttattcatgcatttcatAAAATGTTCTCTTTTACTTACTTGAGGATTTAATGTAAAACCTTTATAATCTCTCCTTTACATACTCCTTTACATTCCAGTGATAACCAATATATACCCATAACCATAAATATATACTCTGTATAAACTCTTCAATATAAAAGTAATTCATAATTCCCAGTGCTAGCCAGAGGAGAATGGTCTGTCCCTGCTGATTTAGCTGCATCACAtgtctgtaaagctacttttaGGAAATCCGTATTATAAAAAGCActataaaaatgcaattttatttaaacGACATGTTATATCAAAACGACTAACAAGTGAGGATGATTTCAATCCAAGTGAAGCAGCTGAGGTTTAGGGGCTTTGCTCAAACCTCAGAAGTGGCTCTCTGAGGCAGCCCTGGAGCTCACTGTGGCTGGGAGTTATAAGCTTCCCTTAGctattagcaacattagcatcaTAGATCTAGTATAATACAAATGAAGCAGACATGTTTTTGGGCTAGGAGGGAATTGTGTACCTTTAGCTGaactattttaaatattctattGTTTACCCTCATTTGTTCTAATTCACATTTCTGTACCTGACTGTGAGAAGGTTTTCTCTAATTTTTGGTCCATTATGTTCATGTTGATCCATTGCTCAGTCAAAACCTGAATTATCATGATAAGTAAAATTAGTACATACATATTTCAGCCCAGTGATTAACATGTCTGACaagatattatatataatgatgCAGCCAGTAACATGTGCTGACAGCGTGTAGGAGAAGTGTGAGAAGTCTGAAACGTGTCTTCCAGAGATGATTGATTTTAcatctctttatctgtctggcTTACGATGCCTCCCAAAGTAGTTGCCGCCAGTGGGCGTGGATTCATCCTGAACTTTCTTGTCATTGGATTATTGAAATATATCATTTACCCTCTTGATTTTTCATCCCAATTTAATCATATCCAAATCAACTCTTTGCATAAGGAAGGTGAAGGCCGTGACAGCTTTCCTTtccatcttttcaaactgcaaCAAGCACAATGCCACAAGGCAGGTGAACTGGaaccagagcctatcctggaaacacgGGGcgcgaggcaggaatacacacttattcacagctaggggcaatttagagtagctgctccacctaccagcatgatGGGAAGAAATTGGAGAACCCAGGCAACACCCATAGGGAAAACAGGGAGAactccacagagacagtaacctgaggtcATGATCAGCGCTGTGCCACCTTTCCACCCTACATGGTACACAGGTACATAATCAAGTAAACCATATTTCTGTCCCCATATTTCAGGTCTGTTTTTAAGCTAAGTTCTGTCTATCACCCAGTAGTTGGACCCTGACACTGCCAGTTCCGTGGTATAAGGCATATAAAATCATCTTATTTGAAAATAGGAAATCATATACAGAAAATCATGATACTGGGTTGTAAGGTAATCATatcattaatttattactgttccGCTGATACCCACACCTCCTGCAACTTCCCTTTATCGGGTTGAGACTTTTCTCTGACTAGAATCCCCTTAAGACTTAGGGGAATTAGGGCTGCGCTTAAGTGGGTGGAGAGGAGCGGCGTGCTGACAGAATGTTTATTAATCAGCCCTGACACGTTTGATTGTTATTCATTTCCACTGACATGTCCCATTGTGTTGATTGTCCCTCCGTTGCCCATCTAGTGACAGACGGCAGAAACCAAAACGGCATAGAGCAGACGAATGTTTATGATCTATGGTGGAAAATACACATGTTATATGGCTAAATGCTGACAGGAGCATTTGATCGACAGTAGGCCAGtgcagcctctctctctgtgatcaATCACAGCTCATCTACAAACCAGCATGAGCAGTAAATCACAAGGATGCTCTTTTTTTTGAGATTCACTCCTGTAGAAATGAATTGGCTGTGTTTGCATGCTGTGgatccaaaaacaacaaaaaaacattcccaCCCTCATTCTCCACTAGAAAACAAACTATgcacaattacaattacaaaggTTTTGCATGCAGTAACACCACAGTGGAAGAAAATCACAGTAAACAGTGGTGGATGAGTTAATGAGCTGAATCCTCCCAGCTCGTTCCTCCTCTCCCGTGTGCTAATGATGTAGCCACGCTCAGGTAACTGTCAGCACGCCGTGATTAATTAAAGTCGAAACTAGGCCAATTTGTCACATTCTTCCATGTggtcagagagagagtggtTTATTGGTGTCTCCTCTTTCGTCCTTTCAGCCACACTCTTTGTGTCACTCCCGTTTCAGAAGGGCTCACCTGATATGACAAAGGTGTCACTAATACCAATTATAGAAAGCTACAATTCTgataataattcaattttatatgattaaaaaaaattccatcaattaaaaaatcatgttcAGGTCATGTGATGTTATTGGCTGTCTTCTGTGTCCCATCTATACTCTTTATAATGATCATCATCGAGAAAACAAAATAtagaatttaaaatacattgtACCATTTCTTTgctataaaatgtaaagcaatgGTCTAGGTCAGTCATTCTCAAATTGAGGtttgtgaagcatagccaggagGTCcgtcatttcattttgttgcaGTGAtgaaaatcacaacccaccattatccaagttattatatttattattgcattCCTAAAGTTAGTGatttatagtaaaaaaaaacaaacaaacgtatcctcatgctagtacagACAAATCAAGGTTTAAGAATTCTGTTCATTCTTAAACCTTGATCTAAGGTACAGTACAGTACGGTTAATTCGTAAACCTTGATGCAAGGTACGGTACATTGCTAAGTAGTGAACAAAGCAGGAGAGCTACAGTTTCATCAGAAGTTCTGCTGATTTGTCTAGTTTCCTTGATCTGTTCATCAGTGATGATATTGCAAAAGCAGGCCCACTCAATGACAAGGACAGGTTCTCCAGTGATACTCTCACTCTCAGATCCGTGTAGTCATCCAAGCAGATGGCTGTCCAAAAATTTTATTCCATGTTTAAGGTTGATACTTTTAGAAAGAAGGGGGCTCCATTAGACAGTGCGTCAGAGACACAAGGGCTCACTTTGTGTAATCAGTCTCTGGCAAAAGATGTTAATAAGGCTAGTATTGCTTCTAGAGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34409 True 7191 TUCP 0.36 2 17272955 17280173

Neighbor

gene id symbol gene type direction distance location
LOC113536221 NA coding downstream 69706 17197989 ~ 17203249 (-)
med8 med8,LOC107690829,LOC107554872,LOC107708572 coding downstream 81496 17186645 ~ 17191459 (-)
szt2 szt2 coding downstream 103603 17066355 ~ 17169352 (-)
ptprfa ptprf,ptprfa,LOC107709086 coding downstream 440087 16625654 ~ 16832868 (-)
kdm4aa kdm4aa,kdm4a,LOC108412690 coding downstream 650358 16589347 ~ 16622597 (-)
sec16b sec16b coding upstream 158467 17438640 ~ 17462625 (-)
dr1 dr1,LOC107555385 coding upstream 250386 17530559 ~ 17539905 (-)
LOC113528309 NA coding upstream 263503 17543676 ~ 17547134 (-)
scinla LOC108272108,LOC108437692,LOC105895209,LOC107675434,LOC107730699,LOC107564434,LOC105011765 coding upstream 270763 17550936 ~ 17567323 (-)
si:ch73-389b16.1 LOC108271542,LOC108437695 coding upstream 297218 17577391 ~ 17579519 (-)
G29119 NA non-coding downstream 218299 17054088 ~ 17054656 (-)
G28779 NA non-coding downstream 701431 16570790 ~ 16571524 (-)
G28537 NA non-coding downstream 783040 16462102 ~ 16489915 (-)
G28508 NA non-coding downstream 913434 16358139 ~ 16359521 (-)
G28515 NA non-coding downstream 943534 16329108 ~ 16329421 (-)
G29167 LOC108272186 non-coding upstream 113285 17393458 ~ 17394467 (-)
G29166 LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 non-coding upstream 114593 17394766 ~ 17396199 (-)
LOC113528975 NA non-coding upstream 143698 17423871 ~ 17429778 (-)
G29174 NA non-coding upstream 153280 17433453 ~ 17434168 (-)
G29176 NA non-coding upstream 174112 17454285 ~ 17468157 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 1137240 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 1777746 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 1811954 15456635 ~ 15461001 (-)
G27843 NA other downstream 1973936 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 2396965 14872948 ~ 14875990 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 192157 17472330 ~ 17529315 (-)
G29263 NA other upstream 668984 17949157 ~ 17949718 (-)
G29279 NA other upstream 790814 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 868055 18148228 ~ 18195628 (-)
LOC113537624 NA other upstream 1513852 18794025 ~ 18816812 (-)

Expression


Co-expression Network